PermutationPval: Permutation based p-value

In spots: Spatial Component Analysis

Permutation based p-value

Description

Calculate permutation based p-values.

Usage

PermutationPval(
  x,
  X.perm,
  alternative = c("two.sided", "less", "greater"),
  p.adjust.method = "BH",
  condition = 0
)

Arguments

x	A numerical vector.
X.perm	A matrix contains permutation result of x.
alternative	Alternative hypothesis used, default is two.sided.
p.adjust.method	Method used for multiple comparisons correction, default is BH. See p.adjust.
condition	Value under null hypothesis to compare with, default is 0.

Value

A list containing the following:

• p.val, permutation based p-value.

• p.adj, adjusted p-values.

spots documentation built on May 3, 2022, 5:06 p.m.