sprex: Calculate Species Richness and Extrapolation Metrics
Version 1.4.1

Calculate species richness functions for rarefaction and extrapolation.

AuthorEric Archer [aut, cre]
Date of publication2016-04-16 19:49:17
MaintainerEric Archer <eric.archer@noaa.gov>
LicenseGNU General Public License
Version1.4.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("sprex")

Getting started

Package overview
README.md

Popular man pages

discovery.curve: Discovery Curve
expected.num.species: Expected Number of Species
f0: Number of Unobserved Species
f.stats: Frequency Vector Statistics
osa.old.growth: Osa beetle species counts
plot.discovery.curve: Plot a Discovery Curve
rarefaction.overlap: Rarefaction Overlap
See all...

All man pages Function index File listing

Man pages

bootstrap.assemblage: Bootstrap Assemblage of Species
discovery.curve: Discovery Curve
expand.freqs: Expand Frequency Matrix
expected.num.species: Expected Number of Species
f0: Number of Unobserved Species
f.stats: Frequency Vector Statistics
num.samples.required: Number of Samples Required
osa.old.growth: Osa beetle species counts
plot.discovery.curve: Plot a Discovery Curve
rarefaction.overlap: Rarefaction Overlap
sample.to.species.freq: Create Vector of Species Frequencies
species.to.sample.freq: Create Vector of Sample Frequencies
sprex-package: Calculate species richness and extrapolation metrics

Functions

ACE Man page Source code
Chao1 Man page Source code
Clench Man page Source code
Swor1 Man page Source code
bootstrap.assemblage Man page Source code
discovery.curve Man page Source code
expand.freqs Man page Source code
expected.num.species Man page Source code
f.stats Man page Source code
f0 Man page
iChao1 Man page Source code
jack1 Man page Source code
jack2 Man page Source code
num.samples.required Man page Source code
osa.old.growth Man page
osa.second.growth Man page
plot.discovery.curve Man page Source code
rarefaction.overlap Man page Source code
s.ind.n.m Source code
sample.to.species.freq Man page Source code
species.to.sample.freq Man page Source code
sprex Man page
sprex-package Man page

Files

NAMESPACE
data
data/osa.second.growth.rda
data/osa.old.growth.rda
R
R/Swor1.R
R/jack.R
R/Chao1.R
R/f0.R
R/sprex-package.R
R/plot.discovery.curve.R
R/rarefaction.overlap.R
R/iChao1.R
R/discovery.curve.R
R/ACE.R
R/bootstrap.assemblage.R
R/expected.num.species.R
R/expand.freqs.R
R/sample.to.species.freq.R
R/species.to.sample.freq.R
R/num.samples.required.R
R/Clench.R
R/f.stats.R
README.md
MD5
DESCRIPTION
man
man/plot.discovery.curve.Rd
man/species.to.sample.freq.Rd
man/sprex-package.Rd
man/osa.old.growth.Rd
man/sample.to.species.freq.Rd
man/expected.num.species.Rd
man/rarefaction.overlap.Rd
man/f0.Rd
man/num.samples.required.Rd
man/f.stats.Rd
man/expand.freqs.Rd
man/discovery.curve.Rd
man/bootstrap.assemblage.Rd
sprex documentation built on May 19, 2017, 11:23 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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