stIHC: Spatial Transcriptomics Iterative Hierarchical Clustering

In stIHC: Spatial Transcriptomics Iterative Hierarchical Clustering

Spatial Transcriptomics Iterative Hierarchical Clustering

Description

Spatial Transcriptomics Iterative Hierarchical Clustering

Usage

stIHC(data)

Arguments

data	data frame with columns x, y for spatial coordinates and subsequent columns containing observations.

Value

A list with elements:

label	Vector of cluster labels.
mean_clusters_mat	Matrix of cluster means.
clusters	List of matrices, each matrix contains the observations belonging to that cluster.

Examples

## Load example data within the package
rds_path <- system.file("extdata", "spatial_data.rds", package = "stIHC")
example_data <- readRDS(rds_path)

## Run stIHC
stihc = stIHC(example_data)

## Inspect cluster assignments
table(stihc$label)

stIHC documentation built on Oct. 21, 2026, 5:14 p.m.