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knitr::opts_chunk$set(echo = TRUE) set.seed({{format(Sys.Date(), format = "%Y%m%d")}})
library(gtsummary); library(tidyverse) # setting and gtsummary theme theme_gtsummary_compact() # example code for importing excel file df_raw_data <- readxl::read_excel( path = here::here("secure_data", "Raw Data from PI.xlsx") ) %>% janitor::clean_names(case = "all_caps") %>% # uppercase col names mutate(across(where(lubridate::is.POSIXt), lubridate::as_date)) # use lubridates
# applying variable labels, and dropping raw variables df_main <- df_main %>% set_derived_variables(path = here::here("scripts/derived_variables.xlsx")) # overview of master analytic dataset skimr::skim(df_main) # saving master analytic data set saveRDS( object = df_main, file = here::here("secure_data", "df_main.Rds") )
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