summary.gData: Summary function for the class 'gData'

In statgenGWAS: Genome Wide Association Studies

Summary function for the class gData

Description

Gives a summary for an object of S3 class gData.

Usage

## S3 method for class 'gData'
summary(object, ..., trials = NULL)

Arguments

object	An object of class gData.
...	Not used.
trials	A vector of trials to include in the summary. These can be either numeric indices or character names of list items in pheno. If NULL, all trials are included.

Value

A list with a most four components:

mapSum

A list with number of markers and number of chromosomes in the map.

markerSum

A list with number of markers, number of genotypes and the distribution of the values within the markers.

phenoSum

A list of data.frames, one per trial with a summary of all traits within the trial.

covarSum

A list of data.frames, one per trial with a summary of all covariates within the trial.

All components are only present in the output if the corresponding content is present in the gData object.

statgenGWAS documentation built on Oct. 13, 2022, 5:05 p.m.