beta.by.gene: Utility to Associate the Value of beta with the Feature it is...
In supcluster: Supervised Cluster Analysis
beta.by.gene R Documentation
Utility to Associate the Value of β with the Feature it is Assocated With
Description
The model associates the coefficients of the random effects with the cluster number. However the cluster numbers are not unique. This utility associates the coefficient with gene that is in the cluster, for each cluster number.
Usage
beta.by.gene(supcluster.list)
Arguments
supcluster.list
The output of supcluster
Value
A matrix is returned with dimensions, the number of MCMC iterations by the number of genes/features +1. The first column is the chain number and the remain columns are the beta value for each of the gene/features
Author(s)
David A. Schoenfeld, Jessie Hsu
References
Added latter
See Also
supcluster,,compare.chains,concordmap
Examples
dat=generate.cluster.data(1)[[1]]
us=supcluster(dat,outcome="outcome",features=1:50,maxclusters=6,nstart=20,n=40)
vs=beta.by.gene(us)
colMeans(vs[,2:7])
supcluster documentation built on May 20, 2022, 1:07 a.m.
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| beta.by.gene | R Documentation |
Utility to Associate the Value of β with the Feature it is Assocated With
Description
The model associates the coefficients of the random effects with the cluster number. However the cluster numbers are not unique. This utility associates the coefficient with gene that is in the cluster, for each cluster number.
Usage
beta.by.gene(supcluster.list)
Arguments
supcluster.list |
The output of |
Value
A matrix is returned with dimensions, the number of MCMC iterations by the number of genes/features +1. The first column is the chain number and the remain columns are the beta value for each of the gene/features
Author(s)
David A. Schoenfeld, Jessie Hsu
References
Added latter
See Also
supcluster,,compare.chains,concordmap
Examples
dat=generate.cluster.data(1)[[1]] us=supcluster(dat,outcome="outcome",features=1:50,maxclusters=6,nstart=20,n=40) vs=beta.by.gene(us) colMeans(vs[,2:7])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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