survAccuracyMeasures: Estimate accuracy measures for risk prediction markers from survival data
Version 1.2

This package provides a function to estimate the AUC, TPR(c), FPR(c), PPV(c), and NPV(c) for for a specific timepoint and marker cutoff value c using non-parametric and semi-parametric estimators. Standard errors and confidence intervals are also computed. Either analytic or bootstrap standard errors can be computed.

AuthorYingye Zheng, Tianxi Cai, and Marshall Brown
Date of publication2014-08-23 00:46:22
MaintainerMarshall Brown <mdbrown@fhcrc.org>
LicenseGPL-2
Version1.2
URL https://github.com/mdbrown/survRpackages
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("survAccuracyMeasures")

Getting started

README.md

Popular man pages

print.SurvAM: Print an object of class SurvAM-output from survEstMeasures
SimData: Simulated data for package 'SurvAccuracyMeasures'
survAM.estimate: Nonparametric and Semiparametric estimates of accuracy...
See all...

All man pages Function index File listing

Man pages

print.SurvAM: Print an object of class SurvAM-output from survEstMeasures
SimData: Simulated data for package 'SurvAccuracyMeasures'
survAM.estimate: Nonparametric and Semiparametric estimates of accuracy...

Functions

Est.Var.CCH.trueweights Source code
Est.Wexp.cpp Source code
EstRTall Source code
EstRTvp Source code
SimData Man page
VTM Source code
WGT.FUN Source code
expit Source code
getEstimatesNP Source code
getEstimatesSP Source code
getWEXP Source code
getWEXPcutoff Source code
logit Source code
prepareDataNP Source code
prepareDataSP Source code
print.SurvAM Man page Source code
processRawOutput Source code
sum.I Source code
survAM.estimate Man page Source code

Files

inst
inst/README.Rmd
inst/example
inst/example/dipw_example.R
src
src/Makevars
src/getWexp.cpp
src/getWexp_cutoff.cpp
src/Code.h
src/Makevars.win
src/RcppExports.cpp
src/Code.cpp
NAMESPACE
NEWS
data
data/SimData.rda
R
R/prepareData.R
R/survAM.estimate.R
R/getEstimatesSP.R
R/getEstimatesNP.R
R/RcppExports.R
R/print.SurvAM.R
R/analytic_SE.R
R/subroutines.R
README.md
MD5
DESCRIPTION
man
man/SimData.Rd
man/print.SurvAM.Rd
man/survAM.estimate.Rd
survAccuracyMeasures documentation built on May 19, 2017, 9:38 a.m.

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