Man pages for swamp
Visualization, Analysis and Adjustment of High-Dimensional Data in Respect to Sample Annotations
| adjust.linearmodel | Batch adjustment using a linear model |
| combat | ComBat algorithm to combine batches. |
| confounding | Heatmap of interrelation of sample annotations |
| corrected.p | Correction of p-values for associations between features and... |
| dense.plot | Density plots of feature associations in observed and... |
| feature.assoc | Associations of the features to a sample annotation in... |
| hca.plot | Dendrogram with according sample annotations |
| hca.test | Tests for annotation differences among sample clusters |
| kill.pc | Removes principal components from a data matrix |
| prince | Linear models of prinicipal conponents dependent on sample... |
| prince.plot | Heatmap of the associations between principal components and... |
| prince.var.plot | ScreePlot of the data variation covered by the principal... |
| quickadjust.ref | Batch adjustment by median-scaling to a reference batch |
| quickadjust.zero | Batch adjustment by median-centering |
| swamp-package | Visualization, Analysis and Adjustment of High-Dimensional... |
