addPkg | addPkg |
archive_retries | archive_retries |
archive_timing | archive_timing |
BiocDevel | BiocDevel |
BiocRelease | BiocRelease |
biocReposForVers | biocReposForVers |
BiocSVNManifest | DEPCRECATED - Create a manifest of Bioc SVN locations |
BiocVers | BiocVers |
branch | branch |
checkIsPkgDir | Check if a directory contains package sources |
cmethods | cmethods |
cranPkgVersManifest | cranPkgVersManifest |
currentCompEnv | currentCompEnv |
defaultRepos | defaultRepos |
dep_repos | dep_repos |
dl_method | dl_method |
errorOrNonZero | Identify error states from R or external programs |
fileFromFileURL | Get path from file URL |
findnewestpkg | Find newest packages in a package info data.frame |
findPkgDir | Find a package directory within an SCM checkout |
findPkgVersionInRepo | findPkgVersionInRepo |
flushSession | flushSession |
full_libpaths | full_libpaths |
getPkgDir | Construct pockage directory path |
GithubManifest | GithubManifest |
gotoVersCommit | gotoVersCommit |
headtail | Head and tail operations on manifests |
install | install_packages |
internal | Internal internet harness |
lazyRepo | lazyRepo |
libManifest | libManifest |
librarypath | .libpaths2 |
library_paths | library_paths |
loadGRAN | Load a GRAN repo package |
loadManifest | loadManifest |
locatePkgVersion | locatePkgVersion |
location-methods | location |
logfun | logfun |
makeBiocSVNURL | Make a Bioconductor SVN url for a package |
makeFileURL | make file url |
makeLibraryCtx | makeLibraryCtx |
makeManifest | Manifest constructor |
makePkgCheckout | Create a checkout of a package and all it's dependencies from... |
makePkgDir | makePkgDir |
makeSeedMan | makeSeedMan |
makeSource | Create a PkgSource object for a package |
manifest_df | manifest_df |
manifestFromCheckoutDir | Create Manifest from 'checkedout' directory containing many... |
manifest_methods | Get or set the manifest associated with an object |
ManifestRow | ManifestRow |
normalizePath2 | normalizePath2 |
notrack | Notrack directory |
nrow | Number of rows |
packages | packages |
parsedSessionInfo-class | Parsed sessionInfo output |
parseSessionInfoString | Parse text output from printing SessionInfo objects |
PkgManifest | PkgManifest |
pkgname | pkgname |
PkgSource-class | PkgSource |
publishManifest | publishManifest |
removeLib | removeLib |
RepoSubset | RepoSubset |
rVersionManifest | rVersionManifest |
SessionManifest | SessionManifest |
shell_timing | Get or set the number of seconds to wait between successive... |
sh_init | shell init |
subdir | subdir |
switchBack | switchBack |
switchDeps | switchrDeps |
switchrBaseDir | Get or set the base directory for switchr libraries |
SwitchrCtx | SwitchrCtx |
switchrDontUnload | Get or set packages to not unload when flushing the system |
switchrManifest | switchrManifest |
switchrNoUnload | Skip unloading of packages in session |
SwitchrParam | SwitchrParam |
switchTo | switchTo |
system_w_init | system_w_init |
updateManifest | updateManifest |
update_PACKAGES | update existing package repository |
versions | versions_df |
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