Class "optsol_dynamicFBA"
Description
Structure of the class "optsol_dynamicFBA"
. Objects of that class are
returned by the function dynamicFBA
. Extends the Class optsol_optimizeProb
.
Objects from the Class
Objects can be created by calls of the function optsol_dynamicFBA
:
test < optsol_dynamicFBA(solver = "glpk", method = "simplex")
.
Slots
solver
:Object of class
"character"
indicating the used solver.method
:Object of class
"character"
indicating the used method.num_of_prob
:Object of class
"integer"
indicating the number of optimization problems.lp_num_cols
:Object of class
"integer"
indicating the number of columns.lp_num_rows
:Object of class
"integer"
indicating the number of rows.lp_obj
:Object of class
"numeric"
containing the values of the objective function.lp_ok
:Object of class
"integer"
containing the exit code of the optimization.lp_stat
:Object of class
"integer"
containing the solution status of the optimization.lp_dir
:Object of class
"character"
indicating the direction of optimization. concentrationMatrix

Object of class
"matrix"
contains concentrations of extracellular metabolite  excRxnNames

Object of class
"matrix"
contains names of exchange reactions for the EC metabolites fluxdist
:Object of class
"fluxDistribution"
containing the solutons flux distributions. timeVec

Object of class
"numeric"
Vector of time points  biomassVec

Object of class
"numeric"
Vector of biomass values  all_fluxes

Object of class
"matrix"
contains fluxes of all reactions at all steps
Extends
Class "optsol_optimizeProb"
, directly.
Class "optsol"
, by class "optsol_optimizeProb", distance 2.
Methods
 plot
signature(x = "optsol_dynamicFBA", y = "missing")
: x
An object of class
optsol_dynamicFBA
. y

not used but kept for compitability with generic plot.
 plotRxns

List of reaction id's to be ploted
 ...

Further arguments passed to
sysBiolAlg
. ArgumentsolverParm
is a good candidate.
Author(s)
Abdelmoneim Amer Desouki
See Also
checkOptSol
,
optsol
,
optsol_optimizeProb
Examples
1  showClass("optsol_dynamicFBA")
