Structure of the class "optsol_dynamicFBA"
. Objects of that class are
returned by the function dynamicFBA
. Extends the Class optsol_optimizeProb
.
Objects can be created by calls of the function optsol_dynamicFBA
:
test < optsol_dynamicFBA(solver = "glpk", method = "simplex")
.
solver
:Object of class "character"
indicating the used solver.
method
:Object of class "character"
indicating the used method.
num_of_prob
:Object of class "integer"
indicating the number of optimization problems.
lp_num_cols
:Object of class "integer"
indicating the number of columns.
lp_num_rows
:Object of class "integer"
indicating the number of rows.
lp_obj
:Object of class "numeric"
containing the values of the objective function.
lp_ok
:Object of class "integer"
containing the exit code of the optimization.
lp_stat
:Object of class "integer"
containing the solution status of the optimization.
lp_dir
:Object of class "character"
indicating the direction of optimization.
Object of class "matrix"
contains concentrations of extracellular metabolite
Object of class "matrix"
contains names of exchange reactions for the EC metabolites
fluxdist
:Object of class "fluxDistribution"
containing the solutons flux distributions.
Object of class "numeric"
Vector of time points
Object of class "numeric"
Vector of biomass values
Object of class "matrix"
contains fluxes of all reactions at all steps
Class "optsol_optimizeProb"
, directly.
Class "optsol"
, by class "optsol_optimizeProb", distance 2.
signature(x = "optsol_dynamicFBA", y = "missing")
:
An object of class optsol_dynamicFBA
.
not used but kept for compitability with generic plot.
List of reaction id's to be ploted
Further arguments passed to sysBiolAlg
. Argument
solverParm
is a good candidate.
Abdelmoneim Amer Desouki
checkOptSol
,
optsol
,
optsol_optimizeProb
1  showClass("optsol_dynamicFBA")

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.
Please suggest features or report bugs with the GitHub issue tracker.
All documentation is copyright its authors; we didn't write any of that.