sybilEFBA: Using Gene Expression Data to Improve Flux Balance Analysis Predictions

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Three different approaches to use gene expression data (or protein measurements) for improving FBA predictions.

Author
Abdelmoneim Amer Desouki [aut, cre]
Date of publication
2015-02-16 07:02:45
Maintainer
Abdelmoneim Amer Desouki <abdelmoneim.amer@uni-duesseldorf.de>
License
GPL-3
Version
1.0.2

View on CRAN

Man pages

eFBA_gene
Function: eFBA
eFBA_rxn
Function: eFBA
FECorr
Function: FECorr: Flux Expression Correlation
findFluxGeneExpr
function to find minimum set of required genes to get a given...
findMDCFlux
find Manhaten-Distance-Closest Flux
gen2Rule
get reaction expression state from gene expression
iAF1260
Escherichia coli Metabolic Model iAF1260
iMM904
Saccharomyces cerevisiae Metabolic Model
iND750
Saccharomyces cerevisiae Metabolic Model iND750
sybilEFBA-package
Use gene expression data to improve Flux Balance Analysis...

Files in this package

sybilEFBA
sybilEFBA/NAMESPACE
sybilEFBA/NEWS
sybilEFBA/data
sybilEFBA/data/iAF1260.RData
sybilEFBA/data/iND750.RData
sybilEFBA/data/iMM904.RData
sybilEFBA/R
sybilEFBA/R/findFluxGeneExpr.R
sybilEFBA/R/gene2Rule.R
sybilEFBA/R/eFBA_gene.R
sybilEFBA/R/FECorr.R
sybilEFBA/R/eFBA_rxn.R
sybilEFBA/R/findMDCFlux.R
sybilEFBA/MD5
sybilEFBA/DESCRIPTION
sybilEFBA/man
sybilEFBA/man/eFBA_rxn.Rd
sybilEFBA/man/gen2Rule.Rd
sybilEFBA/man/eFBA_gene.Rd
sybilEFBA/man/findMDCFlux.Rd
sybilEFBA/man/iND750.Rd
sybilEFBA/man/sybilEFBA-package.Rd
sybilEFBA/man/FECorr.Rd
sybilEFBA/man/findFluxGeneExpr.Rd
sybilEFBA/man/iAF1260.Rd
sybilEFBA/man/iMM904.Rd