sybilEFBA: Using Gene Expression Data to Improve Flux Balance Analysis Predictions
Version 1.0.2

Three different approaches to use gene expression data (or protein measurements) for improving FBA predictions.

Browse man pages Browse package API and functions Browse package files

AuthorAbdelmoneim Amer Desouki [aut, cre]
Date of publication2015-02-16 07:02:45
MaintainerAbdelmoneim Amer Desouki <abdelmoneim.amer@uni-duesseldorf.de>
LicenseGPL-3
Version1.0.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("sybilEFBA")

Man pages

eFBA_gene: Function: eFBA
eFBA_rxn: Function: eFBA
FECorr: Function: FECorr: Flux Expression Correlation
findFluxGeneExpr: function to find minimum set of required genes to get a given...
findMDCFlux: find Manhaten-Distance-Closest Flux
gen2Rule: get reaction expression state from gene expression
iAF1260: Escherichia coli Metabolic Model iAF1260
iMM904: Saccharomyces cerevisiae Metabolic Model
iND750: Saccharomyces cerevisiae Metabolic Model iND750
sybilEFBA-package: Use gene expression data to improve Flux Balance Analysis...

Functions

FECorr Man page Source code
eFBA_gene Man page Source code
eFBA_rxn Man page Source code
findFluxGeneExpr Man page Source code
findMDCFlux Man page Source code
gene2Rule Man page Source code
iAF1260 Man page
iMM904 Man page
iND750 Man page
sybilEFBA Man page
sybilEFBA-package Man page

Files

NAMESPACE
NEWS
data
data/iAF1260.RData
data/iND750.RData
data/iMM904.RData
R
R/findFluxGeneExpr.R
R/gene2Rule.R
R/eFBA_gene.R
R/FECorr.R
R/eFBA_rxn.R
R/findMDCFlux.R
MD5
DESCRIPTION
man
man/eFBA_rxn.Rd
man/gen2Rule.Rd
man/eFBA_gene.Rd
man/findMDCFlux.Rd
man/iND750.Rd
man/sybilEFBA-package.Rd
man/FECorr.Rd
man/findFluxGeneExpr.Rd
man/iAF1260.Rd
man/iMM904.Rd
sybilEFBA documentation built on May 19, 2017, 7:13 a.m.