sybilSBML: SBML Integration in Package 'Sybil'

'SBML' (Systems Biology Markup Language) integration in 'sybil'. Many constraint based metabolic models are published in 'SBML' format ('*.xml'). Herewith is the ability to read and check 'SBML' files in 'sybil' provided.

Author
C. Jonathan Fritzemeier [cre, ctb], Gabriel Gelius-Dietrich [aut, ctb], Deya Alzoubi [ctb]
Date of publication
2016-06-06 20:23:40
Maintainer
C. Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
License
GPL-3 | file LICENSE
Version
2.0.11

View on CRAN

Man pages

closeSBMLfile
Close SBML File
delSBMLmodel
Delete Pointer to SBML Model
getSBMLCompartList
Get Compartment List
getSBMLerrors
Get SBML Errors
getSBMLlevel
Get SBML Level
getSBMLmodel
Get SBML Model
getSBMLmodId
Get Model Id
getSBMLmodName
Get Model Name
getSBMLnumCompart
Get Number of Compartments
getSBMLnumReactions
Get Number of Reactions
getSBMLnumSpecies
Get Number of Species
getSBMLReactionsList
Get Reaction List
getSBMLSpeciesList
Get Species List
getSBMLunitDefinitionsList
Get Unit Definitions List
getSBMLversion
Get SBML Version
openSBMLfile
Open SBML File
readSBMLmod
Reads a Metabolic Network in SBML Format
sbmlError-class
Class '"sbmlError"'
sbmlPtr-class
Class '"sbmlPtr"'
validateSBMLdocument
Validate SBML
versionLibSBML
Get libSBML Version

Files in this package

sybilSBML
sybilSBML/inst
sybilSBML/inst/CITATION
sybilSBML/inst/NEWS.Rd
sybilSBML/inst/INSTALL
sybilSBML/inst/README
sybilSBML/inst/extdata
sybilSBML/inst/extdata/ecoli_core_model.xml
sybilSBML/inst/doc
sybilSBML/inst/doc/sybilSBML.pdf
sybilSBML/inst/doc/sybilSBML.R
sybilSBML/inst/doc/sybilSBML.Rnw
sybilSBML/configure.ac
sybilSBML/src
sybilSBML/src/sybilSBML.c
sybilSBML/src/sybilSBML.h
sybilSBML/src/Makevars.in
sybilSBML/src/sbml.h
sybilSBML/src/sbml.c
sybilSBML/src/Makevars.win
sybilSBML/src/init.c
sybilSBML/NAMESPACE
sybilSBML/R
sybilSBML/R/readSBMLmod.R
sybilSBML/R/generics.R
sybilSBML/R/uglyHack.R
sybilSBML/R/sybilSBML.R
sybilSBML/R/sbmlPtrClass.R
sybilSBML/R/zzz.R
sybilSBML/R/sbmlErrorClass.R
sybilSBML/vignettes
sybilSBML/vignettes/sybilSBML.bib
sybilSBML/vignettes/sybilSBML.Rnw
sybilSBML/README.md
sybilSBML/MD5
sybilSBML/build
sybilSBML/build/vignette.rds
sybilSBML/DESCRIPTION
sybilSBML/configure
sybilSBML/man
sybilSBML/man/getSBMLnumReactions.Rd
sybilSBML/man/validateSBMLdocument.Rd
sybilSBML/man/getSBMLmodId.Rd
sybilSBML/man/readSBMLmod.Rd
sybilSBML/man/getSBMLCompartList.Rd
sybilSBML/man/getSBMLnumSpecies.Rd
sybilSBML/man/versionLibSBML.Rd
sybilSBML/man/sbmlPtr-class.Rd
sybilSBML/man/sbmlError-class.Rd
sybilSBML/man/getSBMLunitDefinitionsList.Rd
sybilSBML/man/getSBMLmodel.Rd
sybilSBML/man/getSBMLSpeciesList.Rd
sybilSBML/man/getSBMLReactionsList.Rd
sybilSBML/man/delSBMLmodel.Rd
sybilSBML/man/getSBMLlevel.Rd
sybilSBML/man/getSBMLmodName.Rd
sybilSBML/man/openSBMLfile.Rd
sybilSBML/man/getSBMLnumCompart.Rd
sybilSBML/man/getSBMLerrors.Rd
sybilSBML/man/getSBMLversion.Rd
sybilSBML/man/closeSBMLfile.Rd
sybilSBML/configure.win
sybilSBML/cleanup
sybilSBML/LICENSE