Converts a tree from Newick or matching to moment format
a tree in Newick format or a
rearranged labels for tips; these must be the original labels
The L-matrix class consists of $5$ components: "L" is the L-matrix in square form. "L.ut" is the L-matrix in upper-triangular form. "Newick" is the Newick representation of the tree. "tip.label" is the character vector of tip labels. "tip.label.n" is the number of tips.
a moment L-matrix corresponding to the input phylogentic tree object
Kem Phillips <[email protected]>
K Phillips, Symbolic Computation of the Central Moments of the Multivariate Normal Distribution, Journal of Statistical Software, 2010.
J. Felsenstein, The Newick tree format, 1990, http://evolution.genetics.washington.edu/phylip/newicktree.html
P.W. Diaconis and S. Holmes, Matchings and Phylogenetic Trees, Proc. Natl. Acad. Sci., 1998, 95(25), 14600-14602
functions toNewick and toMatching
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