Session Report - Statistical Tests

In tRigon: Toolbox for Integrative Pathomics Analysis

knitr::opts_chunk$set(warning = FALSE, message = FALSE)

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---

params$session_info

feature:

params$feature_var

group variable:

params$group_var

groups:

params$groups
if (params$na_omit == TRUE) {
  print(paste0("Warning: group variable contains NAs. ", params$na_n, " values excluded."))
}

selected statistical test:

if (params$test_selection == "pairwise Wilcoxon-Rank") {
  print("two-sided pairwise Wilcoxon-Rank test with bonferroni-adjustment for multiple testing")
} else if (params$test_selection == "bootstrapped CI") {
  print("500-times bootstrapped confidence intervalls with difference in feature medians between groups")
} else if (params$test_selection == "Kruskal-Wallis") {
  print("Kruskal-Wallis one-way analaysis of variance ")
}

output statistical test:

params$stats_output

output data frame:

knitr::kable(params$stats_df, format = "markdown")

tRigon documentation built on Sept. 11, 2024, 5:17 p.m.