Description Usage Arguments Details Value Author(s) References
View source: R/simnetfromtap.R
The workhorse function of this package, called by various other functions to construct a bipartite interaction network
1 2 3 4 5 6 7 8 | simnetfromtap(
traits,
abuns,
paramsList,
pems,
tmatch_type_pem,
tmatch_type_obs
)
|
traits |
a named ("low"/"high") list of species-named trait data matrices for lower and higher trophic level; |
abuns |
a named ("low"/"high") list of species-named abundance vectors for lower and higher trophic level; |
paramsList |
a list of parameter values with six elements: [[1]] and [[2]]: two vectors of linear combination parameters (importance values, one vector for each trophic level); [[3]]: a single shift parameter added to linear combination of higher trophic level PEMs; [[4]]: a single trait matching parameter for the PEMs; [[5]]: a vector of trait matching parameters for observed traits; [[6]]: a non-negative scalar delta to weight the importance of abundances |
pems |
a named ("low"/"high") list of two species-named data frames (PEMs of lower and higher trophic level); |
tmatch_type_pem |
type of trait matching function for latent traits (any name accepted by |
tmatch_type_obs |
type of trait matching function for observed traits (see previous argument). |
Details in here!
A named interaction matrix.
Gita Benadi <gita.benadi@biom.uni-freiburg.de> and Carsten Dormann <carsten.dormann@biom.uni-freiburg.de>
Benadi et al. in prep
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