Man pages for taxodist
Taxonomic Distance and Phylogenetic Lineage Computation
| check_coverage | Check whether a taxon is covered by The Taxonomicon |
| clear_cache | Clear the taxodist lineage cache |
| closest_relative | Find the closest relative of a taxon among a set of... |
| compare_lineages | Compare lineages of two taxa side by side |
| distance_matrix | Compute pairwise taxonomic distances for a set of taxa |
| filter_clade | Filter a vector of taxa to those belonging to a given clade |
| get_lineage | Retrieve the full taxonomic lineage of a taxon by name |
| get_lineage_by_id | Retrieve the full taxonomic lineage of a taxon |
| get_taxonomicon_id | Find the Taxonomicon ID for a taxon name |
| is_member | Test whether one taxon is nested within another |
| lineage_depth | Get the lineage depth of a taxon |
| load_cache | Load a previously saved taxodist cache from disk |
| mrca | Compute the most recent common ancestor of two taxa |
| plot.taxodist_cluster | Plot method for taxodist_cluster objects |
| plot.taxodist_ord | Plot method for taxodist_ord objects |
| print.taxodist_path | Print method for taxodist_path objects |
| print.taxodist_result | Print method for taxodist distance results |
| save_cache | Save the taxodist lineage cache to disk |
| shared_clades | List all clades shared between two taxa |
| summary.taxodist_ord | Summary method for taxodist_ord objects |
| taxo_cluster | Cluster taxa by taxonomic distance |
| taxo_distance | Compute the phylogenetic distance between two taxa |
| taxodist-package | taxodist: Taxonomic Distance and Phylogenetic Lineage... |
| taxo_heatmap | Plot a taxonomic heatmap |
| taxo_ordinate | Ordinate taxa in taxonomic distance space |
| taxo_path | Get the taxonomic path between two taxa |
| taxo_search | Search The Taxonomicon for a taxon name |
