Nothing
## VT::03.09.2016 - this will render the output independent
## from the version of the package
suppressPackageStartupMessages(library(tclust))
require(tclust)
require(mvtnorm)
#--- EXAMPLE 1 ------------------------------------------
set.seed(123)
sig <- diag (2)
cen <- rep (1,2)
x <- rbind(mvtnorm::rmvnorm(360, cen * 0, sig),
mvtnorm::rmvnorm(540, cen * 5, sig * 6 - 2),
mvtnorm::rmvnorm(100, cen * 2.5, sig * 50)
)
# Two groups and 10% trimming level
(clus <- tclust (x, k = 2, alpha = 0.1, restr.fact = 8))
# Three groups (one of them very scattered) and 0% trimming level
(clus <- tclust (x, k = 3, alpha=0.0, restr.fact = 100))
#--- EXAMPLE 3 ------------------------------------------
set.seed(123)
data (M5data)
x <- M5data[, 1:2]
(clus.a <- tclust (x, k = 3, alpha = 0.1, restr.fact = 1,
restr = "eigen", equal.weights = TRUE, warnings = 1))
(clus.b <- tclust (x, k = 3, alpha = 0.1, restr.fact = 1,
equal.weights = TRUE, warnings = 1))
(clus.c <- tclust (x, k = 3, alpha = 0.1, restr.fact = 1,
restr = "deter", equal.weights = TRUE, iter.max = 100,
warnings = 1))
(clus.d <- tclust (x, k = 3, alpha = 0.1, restr.fact = 50,
restr = "eigen", equal.weights = FALSE))
#--- EXAMPLE 4 ------------------------------------------
set.seed(123)
data (swissbank)
# Two clusters and 8% trimming level
(clus <- tclust (swissbank, k = 2, alpha = 0.08, restr.fact = 50))
# Three clusters and 0% trimming level
(clus <- tclust (swissbank, k = 3, alpha = 0.0, restr.fact = 110))
##### Discriminant Factor Analysis for tclust Objects ############################
sig <- diag (2)
cen <- rep (1, 2)
x <- rbind(mvtnorm::rmvnorm(360, cen * 0, sig),
mvtnorm::rmvnorm(540, cen * 5, sig * 6 - 2),
mvtnorm::rmvnorm(100, cen * 2.5, sig * 50)
)
(clus.1 <- tclust (x, k = 2, alpha = 0.1, restr.fact = 12))
(clus.2 <- tclust (x, k = 3, alpha = 0.1, restr.fact = 1))
## restr.fact and k are chosen improperly for pointing out the
## difference in the plot of DiscrFact
(dsc.1 <- DiscrFact (clus.1))
(dsc.2 <- DiscrFact (clus.2))
########## Classification Trimmed Likelihood Curves ###################
## Do not run - it takes too long and can show differences on some
## architectures due to the random numbers.
##
if(FALSE)
{
#--- EXAMPLE 1 ------------------------------------------
sig <- diag (2)
cen <- rep (1, 2)
x <- rbind(mvtnorm::rmvnorm(108, cen * 0, sig),
mvtnorm::rmvnorm(162, cen * 5, sig * 6 - 2),
mvtnorm::rmvnorm(30, cen * 2.5, sig * 50)
)
(ctl <- ctlcurves (x, k = 1:4))
}
#--- EXAMPLE 2 ------------------------------------------
data (geyser2)
(ctl <- ctlcurves (geyser2, k = 1:5))
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