separate_tags: Separate locus tag into multiple rows
In tidypmc: Parse Full Text XML Documents from PubMed Central
View source: R/separate_tags.R
separate_tags R Documentation
Separate locus tag into multiple rows
Description
Separates locus tags mentioned in full text and expands ranges like
YPO1970-74 into new rows
Usage
separate_tags(txt, pattern, column = "text")
Arguments
txt
a table
pattern
regular expression to match locus tags like YPO[0-9-]+ or
the locus tag prefix like YPO.
column
column name to search, default "text"
Value
a tibble with locus tag, matching text and rows.
Author(s)
Chris Stubben
Examples
x <- data.frame(row = 1, text = "some genes like YPO1002 and YPO1970-74")
separate_tags(x, "YPO")
tidypmc documentation built on Sept. 11, 2024, 7:17 p.m.
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View source: R/separate_tags.R
| separate_tags | R Documentation |
Separate locus tag into multiple rows
Description
Separates locus tags mentioned in full text and expands ranges like YPO1970-74 into new rows
Usage
separate_tags(txt, pattern, column = "text")
Arguments
txt |
a table |
pattern |
regular expression to match locus tags like YPO[0-9-]+ or the locus tag prefix like YPO. |
column |
column name to search, default "text" |
Value
a tibble with locus tag, matching text and rows.
Author(s)
Chris Stubben
Examples
x <- data.frame(row = 1, text = "some genes like YPO1002 and YPO1970-74")
separate_tags(x, "YPO")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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