extrapol_mess: Multivariate environmental similarity surfaces (MESS)

In tidysdm: Species Distribution Models with Tidymodels

Multivariate environmental similarity surfaces (MESS)

Description

Compute multivariate environmental similarity surfaces (MESS), as described by Elith et al., 2010.

Usage

extrapol_mess(x, training, .col, ...)

## Default S3 method:
extrapol_mess(x, training, ...)

## S3 method for class 'stars'
extrapol_mess(x, ...)

## S3 method for class 'SpatRaster'
extrapol_mess(x, training, .col, filename = "", ...)

## S3 method for class 'data.frame'
extrapol_mess(x, training, .col, ...)

## S3 method for class 'SpatRasterDataset'
extrapol_mess(x, training, .col, ...)

Arguments

x	terra::SpatRaster, stars, terra::SpatRasterDataset or data.frame
training	matrix or data.frame or sf object containing the reference values; each column should correspond to one layer of the terra::SpatRaster object, with the exception of the presences column defined in .col (optional).
.col	the column containing the presences (optional). If specified, it is excluded when computing the MESS scores.
...	additional arguments as for terra::writeRaster()
filename	character. Output filename (optional)

Details

This function is a modified version of mess in package predicts, with a method added to work on terra::SpatRasterDataset. Note that the method for terra::SpatRasterDataset assumes that each variables is stored as a terra::SpatRaster with time information within x. Time is also assumed to be in years. If these conditions are not met, it is possible to manually extract a terra::SpatRaster for each time step, and use extrapol_mess on those terra::SpatRasters

Value

a terra::SpatRaster (data.frame) with the MESS values.

Author(s)

Jean-Pierre Rossi, Robert Hijmans, Paulo van Breugel, Andrea Manica

References

Elith J., M. Kearney M., and S. Phillips, 2010. The art of modelling range-shifting species. Methods in Ecology and Evolution 1:330-342.

tidysdm documentation built on April 3, 2025, 9:56 p.m.