tidytlg: tidytlg: A package for producing tables, listings, and graphs...

In tidytlg: Create TLGs using the 'tidyverse'

tidytlg: A package for producing tables, listings, and graphs (TLGs) using tidyverse packages.

Description

The tidytlg package provide a set of function allowing you to produce TLGs using table metadata.

tidytlg Options

• tidytlg.row_type.levels - The values of row_type and their respective levels. Default: c("TABLE_BY_HEADER", "BY_HEADER1", "BY_HEADER2", "BY_HEADER3", "BY_HEADER4", "BY_HEADER5", "HEADER", "N", "VALUE", "NESTED")

• tidytlg.fontsize.title - Font size for titles in points. Default: 10

• tidytlg.fontsize.table.footnote - Font size for footnotes in points. For tables. Default: 9

• tidytlg.fontsize.listing.footnote - Font size for footnotes in points. For listings. Default: 8

• tidytlg.fontsize.graph.footnote - Font size for footnotes in points. For graphs. Default: 8

• tidytlg.fontsize.table - Font size for tables in points. Default: 9

• tidytlg.fontsize.graph - Font size for graphs in points. Default: 10

• tidytlg.fontsize.listing - Font size for listings in poins. Default: 8

• tidytlg.right.padding - Amount of right padding for cells in points. Default: 1

• tidytlg.left.padding - Amount of left padding for cells in points. Default: 1

• tidytlg.stat_labels - Labels to be used for each summary statistic in the output table. Will need to have all available statistics if this option is changed!

• tidytlg.precision.extra - Value to be added on for each summary statistic when calculating precision. This will be used to make different statistics have different precision as needed

• tidytlg.nested_freq.statlist.default - Default statlist object for nested_freq tables. Default: statlist("n (x.x)")

• tidytlg.univar.statlist.default - Default statlist object for univar tables. Default: statlist(c("N", "MEANSD", "MEDIAN", "RANGE", "IQRANGE"))

• tidytlg.freq.statlist.default - Default statlist object for freq tables. Default: statlist("n (x.x)")

• tidytlg.stat_labels - A data.frame controlling how the stats are labeled in a univar table. See 'Default Stat Labels' section for defaults.

• tidytlg.denoms.message - A boolean, should a message print detailing what the denominators are?

Default Stat Labels

stat	label
N	N
SUM	Sum
MEAN	Mean
GeoMEAN	Geometric Mean
SD	Std. Dev.
SE	Std. Error
GSD	Geometric Std. Dev.
GSE	Geometric Std. Error
CV	CV
MEANSD	Mean (SD)
MEANSE	Mean (SE)
MEDIAN	Median
MIN	Minimum
MAX	Maximum
RANGE	Range
Q1	First quartile
Q3	Third quartile
IQRANGE	IQ range
MEDRANGE	Median (Range)
MEDIQRANGE	Median (Q1; Q3)
MEAN_CI	Mean (95% C.I.)
GeoMEAN_CI	Geometric Mean (95% C.I.)

Default Precision Extra

stat	extra
N	0
SUM	0
MEAN	1
GeoMEAN	1
SD	2
SE	2
GSD	2
GSE	2
CV	1
MEDIAN	1
MIN	0
MAX	0
Q1	1
Q3	1
LCL_MEAN	2
UCL_MEAN	2
LCL_GeoMEAN	2
UCL_GeoMEAN	2

Updating Options

• For a single session, an option can be changed by ⁠option(<optionToChange> = <NewValue>)⁠

• To change an option for a single projects across sessions in that projects, place the options update in the .Rprofile in that project directory.

• To change an option for a user across all sessions, place the options update in the .Rprofile file in the users home directory.

• To change an option for all users in an R environment, place the options update in the .Rprofile.site file in the R home directory.

Author(s)

Maintainer: Konrad Pagacz [e-mail]

Authors:

• Nicholas Masel [e-mail]

• Steven Haesendonckx [e-mail]

• Pelagia Alexandra Papadopoulou [e-mail]

• Sheng-Wei Wang [e-mail]

• Eli Miller [e-mail] (ORCID)

• Nathan Kosiba [e-mail] (ORCID)

• Aidan Ceney [e-mail] (ORCID)

Other contributors:

• Janssen R&D [copyright holder, funder]

• David Hugh-Jones (Author of included huxtable library) [copyright holder]

See Also

Useful links:

• https://pharmaverse.github.io/tidytlg/main/

• https://github.com/pharmaverse/tidytlg

• Report bugs at https://github.com/pharmaverse/tidytlg/issues

tidytlg documentation built on June 22, 2024, 10:43 a.m.