API for tileHMM
Hidden Markov Models for ChIP-on-Chip Analysis
| Global functions | |
|---|---|
| .baumWelchEmission,contHMM,contDist,list-method | Man page Man page |
| .baumWelchEmission,contHMM,tDist,list-method | Man page |
| .baumWelchStep,contHMM,list-method | Man page |
| .viterbiTrainingEmission,contHMM,list,list-method | Man page |
| [.contDist | Man page |
| [.contHMM | Man page |
| [.discDist | Man page |
| [.tDist | Man page |
| [<-.contDist | Man page |
| [<-.tDist | Man page |
| [[.discDist | Man page |
| _backward | Man page |
| _baumWelch_trans | Man page |
| _forward | Man page |
| _get_obs_prob | Man page |
| _log_sum | Man page |
| _viterbi | Man page |
| as.data.frame.discDist | Man page Source code |
| as.matrix.discDist | Man page Source code |
| as.vector.discDist | Man page Source code |
| backward | Man page |
| backward,hmm-method | Man page |
| baumWelch | Man page |
| baumWelch,hmm,list-method | Man page |
| baumWelchInit | Source code |
| baumWelchTransition | Source code |
| calcU | Source code |
| contDist-class | Man page |
| contHMM-access | Man page |
| contHMM-class | Man page |
| df.fun | Source code |
| discDist-class | Man page |
| dist-class | Man page |
| find.df | Source code |
| forward | Man page |
| forward,hmm-method | Man page |
| generate.data | Man page Source code |
| get.init | Source code |
| getHMM | Man page Source code |
| gff2index | Man page Source code |
| hmm-class | Man page |
| hmm.setup | Man page Source code |
| initialize,contDist-method | Man page |
| initialize,contHMM | Man page |
| initialize,contHMM-method | Man page |
| initialize,discDist-method | Man page |
| initialize,tDist-method | Man page |
| internals | Man page |
| length,discDist-method | Man page |
| length,hmm-method | Man page |
| logSum | Man page Source code |
| new,contDist-method | Man page |
| new,contHMM-method | Man page |
| new,discDist-method | Man page |
| new,tDist-method | Man page |
| plot | Man page |
| plot.contDist | Man page Source code |
| plot.contHMM | Man page Source code |
| plot.tDist | Man page |
| posterior | Man page Source code |
| reg2gff | Man page Source code |
| region.length | Man page Source code |
| region.position | Man page Source code |
| remove.short | Man page Source code |
| sampleObs | Man page |
| sampleObs,discDist,numeric-method | Man page Man page |
| sampleObs,tDist,numeric-method | Man page |
| sampleSeq | Man page |
| sampleSeq,contHMM,numeric-method | Man page Man page |
| show,contDist-method | Man page |
| show,hmm-method | Man page |
| shrinkt.st | Man page Source code |
| simChIP | Man page |
| states | Man page |
| states,hmm-method | Man page |
| tDist-class | Man page |
| tileHMM | Man page |
| tileHMM-package | Man page |
| viterbi | Man page |
| viterbi,hmm-method | Man page |
| viterbiEM | Man page Source code |
| viterbiTraining | Man page |
| viterbiTraining,hmm,list-method | Man page |
