region.length: Determine Length of Positive and Negative Regions
In tileHMM: Hidden Markov Models for ChIP-on-Chip Analysis

Description Usage Arguments Value Author(s) See Also Examples

Given a logical vector indicating positive and negative probes this function returns a list with components 'positive' and 'negative' providing length information for positive and negative regions.

1	region.length(probes, min.len=1)

`probes`	A logical vector indicating the position of enriched and non-enriched probes with `TRUE` and `FALSE` respectively.
`min.len`	The minimal number of consecutive probes required to form a region.

A list with components positive and negative, each containing a numeric vector with the length of identified regions.

Peter Humburg

region.position

## create random probe calls
probes <- sample(c(TRUE,FALSE), 200, replace=TRUE)

## find length of all regions that contain at least two probes
reg.len <- region.length(probes, min.len=2)