tmbstan: MCMC Sampling from 'TMB' Model Object using 'Stan'

Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <DOI:10.1371/journal.pone.0197954>.

Getting started

Package details

AuthorKasper Kristensen
MaintainerKasper Kristensen <kaskr@dtu.dk>
LicenseGPL (>= 3)
Version1.0.91
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("tmbstan")

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tmbstan documentation built on Aug. 26, 2023, 5:08 p.m.