rtmvnorm2: Sampling Random Numbers From The Truncated Multivariate...

In tmvtnorm: Truncated Multivariate Normal and Student t Distribution

Sampling Random Numbers From The Truncated Multivariate Normal Distribution With Linear Constraints

Description

This function generates random numbers from the truncated multivariate normal distribution with mean equal to mean and covariance matrix sigma and general linear constraints

lower <= D x <= upper

with either rejection sampling or Gibbs sampling.

Usage

rtmvnorm2(n, mean = rep(0, nrow(sigma)), 
  sigma = diag(length(mean)), 
  lower = rep(-Inf, length = length(mean)), 
  upper = rep(Inf, length = length(mean)), 
  D = diag(length(mean)), 
  algorithm = c("gibbs", "gibbsR", "rejection"), ...)

Arguments

n	Number of random points to be sampled. Must be an integer >= 1.
mean	Mean vector (d x 1), default is rep(0, length = ncol(x)).
sigma	Covariance matrix (d x d), default is diag(ncol(x)).
lower	Vector of lower truncation points (r x 1), default is rep( Inf, length = length(mean)).
upper	Vector of upper truncation points (r x 1), default is rep( Inf, length = length(mean)).
D	Matrix for linear constraints (r x d), defaults to diagonal matrix (d x d), i.e. r = d.
algorithm	Method used, possible methods are the Fortan Gibbs sampler ("gibbs", default), the Gibbs sampler implementation in R ("gibbsR") and rejection sampling ("rejection")
...	additional parameters for Gibbs sampling, given to the internal method rtmvnorm.gibbs(), such as burn.in.samples, start.value and thinning, see details in rtmvnorm

Details

This method allows for r > d linear constraints, whereas rtmvnorm requires a full-rank matrix D (d x d) and can only handle r <= d constraints at the moment. The lower and upper bounds lower and upper are (r x 1), the matrix D is (r x d) and x is (d x 1). The default case is r = d and D = I_d.

Warning

This method will be merged with rtmvnorm in one of the next releases.

Author(s)

Stefan Wilhelm

See Also

rtmvnorm

Examples

## Not run: 
################################################################################
#
# Example 5a: Number of linear constraints r > dimension d
#
################################################################################

# general linear restrictions a <= Dx <= b with x (d x 1); D (r x d); a,b (r x 1)

# Dimension d=2, r=3 linear constraints
#
# a1 <=    x1 + x2 <= b2
# a2 <=    x1 - x2 <= b2
# a3 <= 0.5x1 - x2 <= b3
#
# [ a1 ] <= [ 1     1 ] [ x1 ] <= [b1]
# [ a2 ]    [ 1    -1 ] [ x2 ]    [b2]
# [ a3 ]    [ 0.5  -1 ]           [b3]

D <- matrix(
      c(  1,  1,
          1, -1,
        0.5, -1), 3, 2, byrow=TRUE)
a <- c(0, 0, 0)
b <- c(1, 1, 1)

# mark linear constraints as lines
plot(NA, xlim=c(-0.5, 1.5), ylim=c(-1,1))
for (i in 1:3) {
  abline(a=a[i]/D[i, 2], b=-D[i,1]/D[i, 2], col="red")
  abline(a=b[i]/D[i, 2], b=-D[i,1]/D[i, 2], col="red")
}

### Gibbs sampling for general linear constraints a <= Dx <= b
mean <- c(0, 0)
sigma <- matrix(c(1.0, 0.2, 
                  0.2, 1.0), 2, 2)
x0 <- c(0.5, 0.2) # Gibbs sampler start value                  
X <- rtmvnorm2(n=1000, mean, sigma, lower=a, upper=b, D, start.value=x0)

# show random points within simplex
points(X, pch=20, col="black")

## End(Not run)

tmvtnorm documentation built on March 22, 2022, 9:06 a.m.