toolStability-package: toolStability: Tool for Stability Indices Calculation

In toolStability: Tool for Stability Indices Calculation

toolStability: Tool for Stability Indices Calculation

Description

Tools to calculate stability indices with parametric, non-parametric and probabilistic approaches. The basic data format requirement for 'toolStability' is a data frame with 3 columns including numeric trait values, genotype,and environmental labels. Output format of each function is the dataframe with chosen stability index for each genotype. Function "table_stability" offers the summary table of all stability indices in this package. This R package toolStability is part of the main publication: Wang, Casadebaig and Chen (2023) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1007/s00122-023-04264-7")}. Analysis pipeline for main publication can be found on github: https://github.com/Illustratien/Wang_2023_TAAG/tree/V1.0.0. Sample dataset in this package is derived from another publication: Casadebaig P, Zheng B, Chapman S et al. (2016) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pone.0146385")}. For detailed documentation of dataset, please see on Zenodo \Sexpr[results=rd]{tools:::Rd_expr_doi("10.5281/zenodo.4729636")}. Indices used in this package are from: Döring TF, Reckling M (2018) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.eja.2018.06.007")}. Eberhart SA, Russell WA (1966) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2135/cropsci1966.0011183X000600010011x")}. Eskridge KM (1990) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2135/cropsci1990.0011183X003000020025x")}. Finlay KW, Wilkinson GN (1963) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1071/AR9630742")}. Hanson WD (1970) Genotypic stability. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1007/BF00285245")}. Lin CS, Binns MR (1988) https://cdnsciencepub.com/doi/abs/10.4141/cjps88-018. Nassar R, Hühn M (1987). Pinthus MJ (1973) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1007/BF00021563")}. Römer T (1917). Shukla GK (1972). Wricke G (1962).

Author(s)

Maintainer: Tien-Cheng Wang [e-mail]

Other contributors:

• Tsu-Wei Chen [e-mail] [compiler]

See Also

Useful links:

• https://illustratien.github.io/toolStability/

• https://link.springer.com/article/10.1007/s00122-023-04264-7

• https://github.com/Illustratien/toolStability

• https://github.com/Illustratien/Wang_2023_TAAG

• \Sexpr[results=rd]{tools:::Rd_expr_doi("10.5281/zenodo.4729636")}

• Report bugs at https://github.com/Illustratien/toolStability/issues

toolStability documentation built on March 31, 2023, 11:50 p.m.