treeclim: Numerical Calibration of Proxy-Climate Relationships

Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology.

Author
Christian Zang [aut, cre, cph, trl], Franco Biondi [ctb, cph]
Date of publication
2016-09-02 14:28:49
Maintainer
Christian Zang <christian.zang@wzw.tum.de>
License
GPL-3
Version
2.0.0

View on CRAN

Man pages

abbrev_name
Shorten month names
apply_var_names
(re)name climate variable
as_tcclimate
Create the correct data format for variable selection
check_months
Check if all months are between -24 and 12 (previous and...
correct_continuous
Correct continuous month specifications
dcc
Response and correlation function analysis
dlm
Dendro-flavoured linear model
eval_selection
Eval a single list of specifications
exclude_from
Exclude months from analysis
format_month
Get positions and names for months
g_test
Gershunov test for spurious low-frequency modulations
init_boot_data
initialize data structure for bootstrapping
is_continuous
Check if month specification is continuous
make_pmat
Make list of parameter matrices from climate input data
make_range_list
deconstruct call to modifier into list
muc_clim
Monthly Mean Temperature and Total Precipitation for...
muc_fake
Modeled Tree-Ring Chronology of a Spruce Population near...
muc_spruce
Tree-Ring Chronology of a Spruce Population near Munich
norw015
Tree-Ring Chronology of a Pine Population at Visdalen, Norway
norway_prec
Monthly Precipitation Sums for Norway
norway_temp
Monthly Temperature Means for Norway
ptest
Significance test for bootstrapped coefficients
rt_prec
Monthly Precipitation Sums for Rothenburg ob der Tauber,...
rt_spruce
Tree-Ring Chronology of a Spruce Population at Rothenburg ob...
rt_temp
Monthly Temperature Means for Rothenburg ob der Tauber,...
seascorr
Seasonal (partial) correlation analysis
shift_year
shifts a month 0, 1, or 2 years back
skills
Evaluate reconstruction skills using split-calibration
spai020
Tree-Ring Chronology of a Pine Population at Penota, Spain
spain_prec
Monthly Precipitation Sums for Spain
spain_temp
Monthly Temperature Means for Spain
tc_correlation
(bootstrapped) correlation function
tc_design
Deparse list structure from month specification and return...
tc_efunc
evolving response and correlation function
tc_mfunc
moving response and correlation function
tc_response
(bootstrapped) response function
traceplot
Trace the temporal development of response or correlation...
treeclim-modifiers
Modifiers for climate parameter selection
treeclim-shifters
Shift months one or two years back
truncate_input
Truncate climate and tree data to common interval
unify_selection
unify selections to handle "classic" (bootRes-style)...

Files in this package

treeclim
treeclim/inst
treeclim/inst/CITATION
treeclim/inst/Changelog
treeclim/tests
treeclim/tests/testthat.R
treeclim/tests/testthat
treeclim/tests/testthat/test_aggregators.R
treeclim/tests/testthat/test_truncation.R
treeclim/tests/testthat/test_month_processing.R
treeclim/tests/testthat/test_skills.R
treeclim/tests/testthat/test_dcc.R
treeclim/tests/testthat/test_climate_dispatch.R
treeclim/tests/testthat/test_eval_selection.R
treeclim/tests/testthat/test_seascorr.R
treeclim/tests/testthat/test_evolving_functions.R
treeclim/tests/testthat/test_apply_var_names.R
treeclim/src
treeclim/src/Makevars
treeclim/src/respo_exact.cpp
treeclim/src/corfun_exact.cpp
treeclim/src/corfun.cpp
treeclim/src/Makevars.win
treeclim/src/RcppExports.cpp
treeclim/src/pcor.cpp
treeclim/src/respo.cpp
treeclim/src/corfun_noboot.cpp
treeclim/NAMESPACE
treeclim/data
treeclim/data/spain_prec.rda
treeclim/data/norway_prec.rda
treeclim/data/rt_spruce.rda
treeclim/data/rt_prec.rda
treeclim/data/muc_fake.rda
treeclim/data/spain_temp.rda
treeclim/data/muc_spruce.rda
treeclim/data/muc_clim.rda
treeclim/data/spai020.rda
treeclim/data/norw015.rda
treeclim/data/rt_temp.rda
treeclim/data/norway_temp.rda
treeclim/R
treeclim/R/dcc.R
treeclim/R/selection_funs.R
treeclim/R/as_tcclimate.R
treeclim/R/dlm.R
treeclim/R/exclude_from.R
treeclim/R/eval_selection.R
treeclim/R/tc_design.R
treeclim/R/make_pmat.R
treeclim/R/abbrev_name.R
treeclim/R/generics.R
treeclim/R/data.R
treeclim/R/shift_year.R
treeclim/R/is_continuous.R
treeclim/R/tc_response.R
treeclim/R/check_ci.R
treeclim/R/unify_selection.R
treeclim/R/RcppExports.R
treeclim/R/tcase.R
treeclim/R/ptest.R
treeclim/R/tc_correlation.R
treeclim/R/skills.R
treeclim/R/tc_efunc.R
treeclim/R/gershunov.R
treeclim/R/tc_mfunc.R
treeclim/R/validation_metrics.R
treeclim/R/seascorr.R
treeclim/R/apply_var_names.R
treeclim/R/traceplot.R
treeclim/R/init_boot_data.R
treeclim/R/truncate_input.R
treeclim/R/format_months.R
treeclim/R/check_months.R
treeclim/R/correct_continuous.R
treeclim/README.md
treeclim/MD5
treeclim/DESCRIPTION
treeclim/man
treeclim/man/rt_temp.Rd
treeclim/man/as_tcclimate.Rd
treeclim/man/eval_selection.Rd
treeclim/man/is_continuous.Rd
treeclim/man/traceplot.Rd
treeclim/man/tc_design.Rd
treeclim/man/seascorr.Rd
treeclim/man/tc_correlation.Rd
treeclim/man/make_pmat.Rd
treeclim/man/rt_prec.Rd
treeclim/man/make_range_list.Rd
treeclim/man/shift_year.Rd
treeclim/man/apply_var_names.Rd
treeclim/man/tc_mfunc.Rd
treeclim/man/correct_continuous.Rd
treeclim/man/dcc.Rd
treeclim/man/muc_spruce.Rd
treeclim/man/skills.Rd
treeclim/man/norway_temp.Rd
treeclim/man/exclude_from.Rd
treeclim/man/tc_efunc.Rd
treeclim/man/treeclim-shifters.Rd
treeclim/man/unify_selection.Rd
treeclim/man/ptest.Rd
treeclim/man/spain_prec.Rd
treeclim/man/truncate_input.Rd
treeclim/man/init_boot_data.Rd
treeclim/man/dlm.Rd
treeclim/man/tc_response.Rd
treeclim/man/rt_spruce.Rd
treeclim/man/norway_prec.Rd
treeclim/man/format_month.Rd
treeclim/man/check_months.Rd
treeclim/man/spain_temp.Rd
treeclim/man/abbrev_name.Rd
treeclim/man/muc_clim.Rd
treeclim/man/spai020.Rd
treeclim/man/treeclim-modifiers.Rd
treeclim/man/muc_fake.Rd
treeclim/man/g_test.Rd
treeclim/man/norw015.Rd