treeclim: Numerical Calibration of Proxy-Climate Relationships

Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology.

AuthorChristian Zang [aut, cre, cph, trl], Franco Biondi [ctb, cph]
Date of publication2016-09-02 14:28:49
MaintainerChristian Zang <christian.zang@wzw.tum.de>
LicenseGPL-3
Version2.0.0

View on CRAN

Man pages

abbrev_name: Shorten month names

apply_var_names: (re)name climate variable

as_tcclimate: Create the correct data format for variable selection

check_months: Check if all months are between -24 and 12 (previous and...

correct_continuous: Correct continuous month specifications

dcc: Response and correlation function analysis

dlm: Dendro-flavoured linear model

eval_selection: Eval a single list of specifications

exclude_from: Exclude months from analysis

format_month: Get positions and names for months

g_test: Gershunov test for spurious low-frequency modulations

init_boot_data: initialize data structure for bootstrapping

is_continuous: Check if month specification is continuous

make_pmat: Make list of parameter matrices from climate input data

make_range_list: deconstruct call to modifier into list

muc_clim: Monthly Mean Temperature and Total Precipitation for...

muc_fake: Modeled Tree-Ring Chronology of a Spruce Population near...

muc_spruce: Tree-Ring Chronology of a Spruce Population near Munich

norw015: Tree-Ring Chronology of a Pine Population at Visdalen, Norway

norway_prec: Monthly Precipitation Sums for Norway

norway_temp: Monthly Temperature Means for Norway

ptest: Significance test for bootstrapped coefficients

rt_prec: Monthly Precipitation Sums for Rothenburg ob der Tauber,...

rt_spruce: Tree-Ring Chronology of a Spruce Population at Rothenburg ob...

rt_temp: Monthly Temperature Means for Rothenburg ob der Tauber,...

seascorr: Seasonal (partial) correlation analysis

shift_year: shifts a month 0, 1, or 2 years back

skills: Evaluate reconstruction skills using split-calibration

spai020: Tree-Ring Chronology of a Pine Population at Penota, Spain

spain_prec: Monthly Precipitation Sums for Spain

spain_temp: Monthly Temperature Means for Spain

tc_correlation: (bootstrapped) correlation function

tc_design: Deparse list structure from month specification and return...

tc_efunc: evolving response and correlation function

tc_mfunc: moving response and correlation function

tc_response: (bootstrapped) response function

traceplot: Trace the temporal development of response or correlation...

treeclim-modifiers: Modifiers for climate parameter selection

treeclim-shifters: Shift months one or two years back

truncate_input: Truncate climate and tree data to common interval

unify_selection: unify selections to handle "classic" (bootRes-style)...

Functions

. Man page
.. Man page
abbrev_name Man page
apply_var_names Man page
as_tcclimate Man page
check_months Man page
correct_continuous Man page
dcc Man page
dlm Man page
eval_selection Man page
exclude_from Man page
exfr Man page
format_month Man page
g_test Man page
init_boot_data Man page
is_continuous Man page
make_pmat Man page
make_range_list Man page
.mean Man page
muc_clim Man page
muc_fake Man page
muc_spruce Man page
norw015 Man page
norway_prec Man page
norway_temp Man page
ptest Man page
.range Man page
rt_prec Man page
rt_spruce Man page
rt_temp Man page
seascorr Man page
shift_year Man page
skills Man page
spai020 Man page
spain_prec Man page
spain_temp Man page
.sum Man page
tc_correlation Man page
tc_design Man page
tc_efunc Man page
tc_mfunc Man page
tc_response Man page
traceplot Man page
treeclim-modifiers Man page
treeclim-shifters Man page
truncate_input Man page
unify_selection Man page

Files

treeclim
treeclim/inst
treeclim/inst/CITATION
treeclim/inst/Changelog
treeclim/tests
treeclim/tests/testthat.R
treeclim/tests/testthat
treeclim/tests/testthat/test_aggregators.R
treeclim/tests/testthat/test_truncation.R
treeclim/tests/testthat/test_month_processing.R
treeclim/tests/testthat/test_skills.R
treeclim/tests/testthat/test_dcc.R
treeclim/tests/testthat/test_climate_dispatch.R
treeclim/tests/testthat/test_eval_selection.R
treeclim/tests/testthat/test_seascorr.R
treeclim/tests/testthat/test_evolving_functions.R
treeclim/tests/testthat/test_apply_var_names.R
treeclim/src
treeclim/src/Makevars
treeclim/src/respo_exact.cpp
treeclim/src/corfun_exact.cpp
treeclim/src/corfun.cpp
treeclim/src/Makevars.win
treeclim/src/RcppExports.cpp
treeclim/src/pcor.cpp
treeclim/src/respo.cpp
treeclim/src/corfun_noboot.cpp
treeclim/NAMESPACE
treeclim/data
treeclim/data/spain_prec.rda
treeclim/data/norway_prec.rda
treeclim/data/rt_spruce.rda
treeclim/data/rt_prec.rda
treeclim/data/muc_fake.rda
treeclim/data/spain_temp.rda
treeclim/data/muc_spruce.rda
treeclim/data/muc_clim.rda
treeclim/data/spai020.rda
treeclim/data/norw015.rda
treeclim/data/rt_temp.rda
treeclim/data/norway_temp.rda
treeclim/R
treeclim/R/dcc.R treeclim/R/selection_funs.R treeclim/R/as_tcclimate.R treeclim/R/dlm.R treeclim/R/exclude_from.R treeclim/R/eval_selection.R treeclim/R/tc_design.R treeclim/R/make_pmat.R treeclim/R/abbrev_name.R treeclim/R/generics.R treeclim/R/data.R treeclim/R/shift_year.R treeclim/R/is_continuous.R treeclim/R/tc_response.R treeclim/R/check_ci.R treeclim/R/unify_selection.R treeclim/R/RcppExports.R treeclim/R/tcase.R treeclim/R/ptest.R treeclim/R/tc_correlation.R treeclim/R/skills.R treeclim/R/tc_efunc.R treeclim/R/gershunov.R treeclim/R/tc_mfunc.R treeclim/R/validation_metrics.R treeclim/R/seascorr.R treeclim/R/apply_var_names.R treeclim/R/traceplot.R treeclim/R/init_boot_data.R treeclim/R/truncate_input.R treeclim/R/format_months.R treeclim/R/check_months.R treeclim/R/correct_continuous.R
treeclim/README.md
treeclim/MD5
treeclim/DESCRIPTION
treeclim/man
treeclim/man/rt_temp.Rd treeclim/man/as_tcclimate.Rd treeclim/man/eval_selection.Rd treeclim/man/is_continuous.Rd treeclim/man/traceplot.Rd treeclim/man/tc_design.Rd treeclim/man/seascorr.Rd treeclim/man/tc_correlation.Rd treeclim/man/make_pmat.Rd treeclim/man/rt_prec.Rd treeclim/man/make_range_list.Rd treeclim/man/shift_year.Rd treeclim/man/apply_var_names.Rd treeclim/man/tc_mfunc.Rd treeclim/man/correct_continuous.Rd treeclim/man/dcc.Rd treeclim/man/muc_spruce.Rd treeclim/man/skills.Rd treeclim/man/norway_temp.Rd treeclim/man/exclude_from.Rd treeclim/man/tc_efunc.Rd treeclim/man/treeclim-shifters.Rd treeclim/man/unify_selection.Rd treeclim/man/ptest.Rd treeclim/man/spain_prec.Rd treeclim/man/truncate_input.Rd treeclim/man/init_boot_data.Rd treeclim/man/dlm.Rd treeclim/man/tc_response.Rd treeclim/man/rt_spruce.Rd treeclim/man/norway_prec.Rd treeclim/man/format_month.Rd treeclim/man/check_months.Rd treeclim/man/spain_temp.Rd treeclim/man/abbrev_name.Rd treeclim/man/muc_clim.Rd treeclim/man/spai020.Rd treeclim/man/treeclim-modifiers.Rd treeclim/man/muc_fake.Rd treeclim/man/g_test.Rd treeclim/man/norw015.Rd

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