treeclim: Numerical Calibration of Proxy-Climate Relationships
Version 2.0.0

Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology.

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AuthorChristian Zang [aut, cre, cph, trl], Franco Biondi [ctb, cph]
Date of publication2016-09-02 14:28:49
MaintainerChristian Zang <christian.zang@wzw.tum.de>
LicenseGPL-3
Version2.0.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("treeclim")

Man pages

abbrev_name: Shorten month names
apply_var_names: (re)name climate variable
as_tcclimate: Create the correct data format for variable selection
check_months: Check if all months are between -24 and 12 (previous and...
correct_continuous: Correct continuous month specifications
dcc: Response and correlation function analysis
dlm: Dendro-flavoured linear model
eval_selection: Eval a single list of specifications
exclude_from: Exclude months from analysis
format_month: Get positions and names for months
g_test: Gershunov test for spurious low-frequency modulations
init_boot_data: initialize data structure for bootstrapping
is_continuous: Check if month specification is continuous
make_pmat: Make list of parameter matrices from climate input data
make_range_list: deconstruct call to modifier into list
muc_clim: Monthly Mean Temperature and Total Precipitation for...
muc_fake: Modeled Tree-Ring Chronology of a Spruce Population near...
muc_spruce: Tree-Ring Chronology of a Spruce Population near Munich
norw015: Tree-Ring Chronology of a Pine Population at Visdalen, Norway
norway_prec: Monthly Precipitation Sums for Norway
norway_temp: Monthly Temperature Means for Norway
ptest: Significance test for bootstrapped coefficients
rt_prec: Monthly Precipitation Sums for Rothenburg ob der Tauber,...
rt_spruce: Tree-Ring Chronology of a Spruce Population at Rothenburg ob...
rt_temp: Monthly Temperature Means for Rothenburg ob der Tauber,...
seascorr: Seasonal (partial) correlation analysis
shift_year: shifts a month 0, 1, or 2 years back
skills: Evaluate reconstruction skills using split-calibration
spai020: Tree-Ring Chronology of a Pine Population at Penota, Spain
spain_prec: Monthly Precipitation Sums for Spain
spain_temp: Monthly Temperature Means for Spain
tc_correlation: (bootstrapped) correlation function
tc_design: Deparse list structure from month specification and return...
tc_efunc: evolving response and correlation function
tc_mfunc: moving response and correlation function
tc_response: (bootstrapped) response function
traceplot: Trace the temporal development of response or correlation...
treeclim-modifiers: Modifiers for climate parameter selection
treeclim-shifters: Shift months one or two years back
truncate_input: Truncate climate and tree data to common interval
unify_selection: unify selections to handle "classic" (bootRes-style)...

Functions

. Man page
.. Man page
.mean Man page
.range Man page
.sum Man page
abbrev_name Man page Source code
apply_var_names Man page Source code
as_tcclimate Man page Source code
check_ci Source code
check_months Man page Source code
coef.tc_coef Source code
coef.tc_dcc Source code
coef.tc_ecoef Source code
coef.tc_mcoef Source code
coefficient_of_efficiency Source code
corfun Source code
corfunexact Source code
corfunnoboot Source code
correct_continuous Man page Source code
dcc Man page Source code
dlm Man page Source code
eval_selection Man page Source code
exclude_from Man page Source code
exfr Man page
format_month Man page Source code
g_test Man page Source code
init_boot_data Man page Source code
is_continuous Man page Source code
make_pmat Man page Source code
make_range_list Man page Source code
mean Source code
muc_clim Man page
muc_fake Man page
muc_spruce Man page
norw015 Man page
norway_prec Man page
norway_temp Man page
pcor Source code
plot.tc_dcc Source code
plot.tc_seascorr Source code
plot.tc_skills Source code
print.tc_coef Source code
print.tc_dcc Source code
print.tc_design Source code
print.tc_ecoef Source code
print.tc_mcoef Source code
print.tc_seascorr Source code
print.tc_skills Source code
ptest Man page Source code
range Source code
reduction_of_error Source code
respo Source code
respoexact Source code
rt_prec Man page
rt_spruce Man page
rt_temp Man page
seascorr Man page Source code
shift_year Man page Source code
skills Man page Source code
spai020 Man page
spain_prec Man page
spain_temp Man page
sum Source code
summary.tc_dcc Source code
tc_correlation Man page Source code
tc_design Man page Source code
tc_efunc Man page Source code
tc_mfunc Man page Source code
tc_response Man page Source code
tcase Source code
traceplot Man page Source code
treeclim-modifiers Man page
treeclim-shifters Man page
truncate_input Man page Source code
unify_selection Man page Source code

Files

inst
inst/CITATION
inst/Changelog
tests
tests/testthat.R
tests/testthat
tests/testthat/test_aggregators.R
tests/testthat/test_truncation.R
tests/testthat/test_month_processing.R
tests/testthat/test_skills.R
tests/testthat/test_dcc.R
tests/testthat/test_climate_dispatch.R
tests/testthat/test_eval_selection.R
tests/testthat/test_seascorr.R
tests/testthat/test_evolving_functions.R
tests/testthat/test_apply_var_names.R
src
src/Makevars
src/respo_exact.cpp
src/corfun_exact.cpp
src/corfun.cpp
src/Makevars.win
src/RcppExports.cpp
src/pcor.cpp
src/respo.cpp
src/corfun_noboot.cpp
NAMESPACE
data
data/spain_prec.rda
data/norway_prec.rda
data/rt_spruce.rda
data/rt_prec.rda
data/muc_fake.rda
data/spain_temp.rda
data/muc_spruce.rda
data/muc_clim.rda
data/spai020.rda
data/norw015.rda
data/rt_temp.rda
data/norway_temp.rda
R
R/dcc.R
R/selection_funs.R
R/as_tcclimate.R
R/dlm.R
R/exclude_from.R
R/eval_selection.R
R/tc_design.R
R/make_pmat.R
R/abbrev_name.R
R/generics.R
R/data.R
R/shift_year.R
R/is_continuous.R
R/tc_response.R
R/check_ci.R
R/unify_selection.R
R/RcppExports.R
R/tcase.R
R/ptest.R
R/tc_correlation.R
R/skills.R
R/tc_efunc.R
R/gershunov.R
R/tc_mfunc.R
R/validation_metrics.R
R/seascorr.R
R/apply_var_names.R
R/traceplot.R
R/init_boot_data.R
R/truncate_input.R
R/format_months.R
R/check_months.R
R/correct_continuous.R
README.md
MD5
DESCRIPTION
man
man/rt_temp.Rd
man/as_tcclimate.Rd
man/eval_selection.Rd
man/is_continuous.Rd
man/traceplot.Rd
man/tc_design.Rd
man/seascorr.Rd
man/tc_correlation.Rd
man/make_pmat.Rd
man/rt_prec.Rd
man/make_range_list.Rd
man/shift_year.Rd
man/apply_var_names.Rd
man/tc_mfunc.Rd
man/correct_continuous.Rd
man/dcc.Rd
man/muc_spruce.Rd
man/skills.Rd
man/norway_temp.Rd
man/exclude_from.Rd
man/tc_efunc.Rd
man/treeclim-shifters.Rd
man/unify_selection.Rd
man/ptest.Rd
man/spain_prec.Rd
man/truncate_input.Rd
man/init_boot_data.Rd
man/dlm.Rd
man/tc_response.Rd
man/rt_spruce.Rd
man/norway_prec.Rd
man/format_month.Rd
man/check_months.Rd
man/spain_temp.Rd
man/abbrev_name.Rd
man/muc_clim.Rd
man/spai020.Rd
man/treeclim-modifiers.Rd
man/muc_fake.Rd
man/g_test.Rd
man/norw015.Rd
treeclim documentation built on May 19, 2017, 1:56 p.m.