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tripsAndDipR: Identification of 2n and 3n Samples from Amplicon Sequencing Data
Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) <doi:10.1111/1755-0998.13073>.
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Package details |
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| Author | Thomas Delomas [aut, cre] |
| Maintainer | Thomas Delomas <thomas.delomas@idfg.idaho.gov> |
| License | MIT + file LICENSE |
| Version | 0.1.0 |
| URL | https://github.com/delomast/tripsAndDipR |
| Package repository | View on CRAN |
| Installation |
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