tripsAndDipR: Identification of 2n and 3n Samples from Amplicon Sequencing Data

Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) <doi:10.1111/1755-0998.13073>.

Getting started

Package details

AuthorThomas Delomas [aut, cre]
MaintainerThomas Delomas <>
LicenseMIT + file LICENSE
Package repositoryView on CRAN
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tripsAndDipR documentation built on Aug. 28, 2019, 5:03 p.m.