tripsAndDipR: Identification of 2n and 3n Samples from Amplicon Sequencing Data

Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) <doi:10.1111/1755-0998.13073>.

Getting started

Package details

AuthorThomas Delomas [aut, cre]
MaintainerThomas Delomas <thomas.delomas@idfg.idaho.gov>
LicenseMIT + file LICENSE
Version0.1.0
URL https://github.com/delomast/tripsAndDipR
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("tripsAndDipR")

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tripsAndDipR documentation built on Aug. 28, 2019, 5:03 p.m.