Man pages for ubms
Bayesian Models for Data from Unmarked Animals using 'Stan'
| coef-ubmsFit-method | Extract Coefficient Values From a ubmsFit Model |
| extract_log_lik | Extract Pointwise Log-likelihood From Model |
| extract-ubmsFit-method | Extract Samples From a ubmsFit Model |
| fitList-ubmsFit-method | Create a List of ubmsFit Models |
| fitted-ubmsFit-method | Extract Fitted Values |
| get_elapsed_time-ubmsFit-method | Get Model Runtime |
| get_stancode-ubmsFit-method | Get Stan Code From Model |
| getY-ubmsFit-method | Extract y, the Response Variable, From a ubmsFit Model |
| gof | Check model goodness-of-fit |
| kfold-ubmsFit-method | K-fold Cross-validation of a ubmsFit Model |
| loo-ubmsFit-method | Leave-one-out Cross Validation |
| modSel-ubmsFitList-method | Model Selection For a List of ubmsFit Models |
| names-ubmsFitList-method | Get Names of Models in a ubmsFitList |
| names-ubmsFit-method | Get Parameter Names From a ubmsFit Model |
| nsamples-ubmsFit-method | Get number of Posterior Samples Stored in a ubmsFit Model |
| plot_effects-ubmsFit-method | Plot Marginal Effects of Covariates |
| plot_posteriors-ubmsFit-method | Plot Posterior Distributions |
| plot_residuals-ubmsFit-method | Plot Model Residuals |
| plot_spatial | Plot A Map of the State Parameter Based on a Spatial ubms... |
| plot-ubmsFit-ANY-method | Plot Residuals For All Submodels in a ubmsFit Model |
| posterior_linpred-ubmsFit-method | Posterior Distribution of the Linear Predictor |
| posterior_predict-ubmsFit-method | Draw from the posterior predictive distribution |
| predict-ubmsFit-method | Predict parameter values from a fitted model |
| priors | Prior distributions |
| projected | Projected Occupancy Trajectories |
| ranef-ubmsFit-method | Extract Random Effects |
| residuals-ubmsFit-method | Extract Model Residuals |
| RSR | Get Information for a Restricted Spatial Regression Model |
| stan_colext | Fit the MacKenzie et al. (2003) Dynamic Occupancy Model |
| stan_distsamp | Fit the Royle et al. (2004) Distance Sampling Model |
| stan_multinomPois | Fit the Multinomial-Poisson Mixture Model |
| stan_occu | Fit the MacKenzie et al. (2002) Occupancy Model |
| stan_occuRN | Fit the Occupancy Model of Royle and Nichols (2003) |
| stan_occuTTD | Fit Time-to-detection Occupancy Models |
| stan_pcount | Fit the N-mixture model of Royle (2004) |
| sub-ubmsFit-character-missing-missing-method | Extract a Submodel from a ubmsFit Model |
| sub-ubmsSubmodelList-character-missing-missing-method | Extract a ubmsSubmodel From a ubmsSubmodelList Object |
| summary-ubmsFit-method | Extract Summary Statistics from a ubmsFit Model |
| traceplot-ubmsFit-method | Markov Chain Traceplots |
| turnover | Turnover Probability |
| ubms | ubms |
| ubmsFitList-extractors | Extractors for ubmsFitList objects Extract parts of... |
| waic-ubmsFit-method | Widely Applicable Information Criterion (WAIC) |
