untb: ecological drift under the UNTB
Version 1.7-2

A collection of utilities for biodiversity data. Includes the simulation of ecological drift under Hubbell's Unified Neutral Theory of Biodiversity, and the calculation of various diagnostics such as Preston curves. Now includes functionality provided by Francois Munoz and Andrea Manica.

AuthorRobin K. S. Hankin
Date of publication2013-12-12 20:26:25
MaintainerRobin K. S. Hankin <hankin.robin@gmail.com>
LicenseGPL
Version1.7-2
URL http://www.r-project.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("untb")

Popular man pages

alonso: Various functions from Alonso and McKane 2004
bci: Barro Colorado Island (BCI) dataset
etienne: Etienne's sampling formula
expected.abundance: Expected abundances under the neutral model
optimal.prob: Returns an estimate of the fundamental biodiversity number
saunders: Dataset due to Saunders
simpson: Simpson's diversity index
See all...

All man pages Function index File listing

Man pages

alonso: Various functions from Alonso and McKane 2004
bci: Barro Colorado Island (BCI) dataset
butterflies: abundance data for butterflies
caruso: Dataset due to Caruso
census: Construct, coerce, and test for a census object
copepod: Copepod data supplied by Phil Pugh
count: Construct, coerce, and test for a count object
display.untb: Animation of neutral ecological drift
etienne: Etienne's sampling formula
expected.abundance: Expected abundances under the neutral model
extractor: Extract rows of a database in count form
fisher: Various functionality to implement Fisher's logseries
ghats: Tree counts in 1-ha plots from the Western Ghats mountains...
isolate: Randomly select a subset of an ecosystem
logkda: Etienne's K(D,A)
logS1: logarithms of Stirling numbers of the first kind
no.of.ind: Ecosystem diagnostics
optimal.params.gst: Estimation of local immigration using GST(k) statistics
optimal.params.sloss: Estimation of neutral community parameters using a two-stage...
optimal.prob: Returns an estimate of the fundamental biodiversity number
phi: Hubbell's phi
plot.count: Abundance curves
plus: Add two count objects
preston: Preston diagram of an ecosystem
print.preston: Print and plot objects of class Preston
print.summary.count: Print method for summary objects
rand.neutral: Random neutral ecosystem
sahfos: Biodiversity dataset provided by SAHFOS
saunders: Dataset due to Saunders
simpson: Simpson's diversity index
species.count: Ecosystem diagnostics for output of untb()
spitale: Counts of diatom species in springs of the Adamello-Brenta...
summary: Summary methods for count and census objects
theta.prob: Posterior probabilities for theta
untb: Ecological drift simulation under the Unified Neutral Theory...
untb.package: Unified neutral theory of biodiversity
vallade: Various functions from Vallade and Houchmandzadeh
volkov: Expected frequency of species
zsm: Zero sum multinomial distribution as derived by McKane

Functions

Files

inst
inst/CITATION
inst/doc
inst/doc/untbpaper.pdf
inst/doc/untbpaper.R
inst/doc/untbpaper.Rnw
NAMESPACE
demo
demo/untb.R
demo/00Index
data
data/ostracod.rda
data/sahfos.rda
data/butterflies.rda
data/ghats.rda
data/copepod.rda
data/saunders.rda
data/spitale.rda
data/caruso.rda
R
R/untb.R
R/sysdata.rda
R/munoz.R
vignettes
vignettes/dat.Rdata
vignettes/rn.Rdata
vignettes/synthetic_spp.Rdata
vignettes/a_logkda.Rdata
vignettes/untb.bib
vignettes/untbpaper.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/logS1.Rd
man/ghats.Rd
man/plot.count.Rd
man/rand.neutral.Rd
man/butterflies.Rd
man/untb.package.Rd
man/simpson.Rd
man/optimal.params.sloss.Rd
man/print.preston.Rd
man/alonso.Rd
man/bci.Rd
man/isolate.Rd
man/optimal.prob.Rd
man/vallade.Rd
man/zsm.Rd
man/etienne.Rd
man/untb.Rd
man/fisher.Rd
man/spitale.Rd
man/display.untb.Rd
man/volkov.Rd
man/plus.Rd
man/census.Rd
man/sahfos.Rd
man/extractor.Rd
man/species.count.Rd
man/preston.Rd
man/phi.Rd
man/print.summary.count.Rd
man/no.of.ind.Rd
man/count.Rd
man/theta.prob.Rd
man/saunders.Rd
man/expected.abundance.Rd
man/copepod.Rd
man/caruso.Rd
man/summary.Rd
man/optimal.params.gst.Rd
man/logkda.Rd
untb documentation built on May 20, 2017, 6:03 a.m.

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