usdm: Uncertainty Analysis for Species Distribution Models

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This is a framework that aims to provide methods and tools for assessing the impact of different sources of uncertainties (e.g.positional uncertainty) on performance of species distribution models (SDMs).)

Author
Babak Naimi
Date of publication
2015-08-01 07:37:36
Maintainer
Babak Naimi <naimi.b@gmail.com>
License
GPL (>= 3)
Version
1.1-15
URLs

View on CRAN

Man pages

exclude
Excluding variables specified in a VIF object
lisa
Local indicators of spatial association
plot.RasterVariogram
Plot variogram or variogram cloud or boxplot based on...
plot.speciesLisa
Plot positional uncertainty based on LISA
RasterVariogram-class
RasterVariogram class
speciesLisa
LISA in predictors at species occurrence locations
speciesLISA-class
speciesLISA class
usdm-package
Uncertainty analysis for SDMs
Variogram
Empirical variogram for raster data
vif
Variance Inflation Factor
VIF-class
VIF class

Files in this package

usdm
usdm/inst
usdm/inst/external
usdm/inst/external/boundary.shx
usdm/inst/external/predictors.grd
usdm/inst/external/spain.grd
usdm/inst/external/boundary.sbn
usdm/inst/external/species_nl.dbf
usdm/inst/external/species_nl.shp
usdm/inst/external/species_nl.shx
usdm/inst/external/predictors.gri
usdm/inst/external/boundary.shp
usdm/inst/external/spain.gri
usdm/inst/external/boundary.prj
usdm/inst/external/boundary.sbx
usdm/inst/external/boundary.dbf
usdm/NAMESPACE
usdm/R
usdm/R/speciesLisa.R
usdm/R/lisa.R
usdm/R/plot.R
usdm/R/show.R
usdm/R/vif.R
usdm/R/Variogram.R
usdm/R/exclude.R
usdm/R/AAAClasses.R
usdm/MD5
usdm/DESCRIPTION
usdm/man
usdm/man/exclude.Rd
usdm/man/speciesLisa.Rd
usdm/man/vif.Rd
usdm/man/plot.speciesLisa.Rd
usdm/man/RasterVariogram-class.Rd
usdm/man/lisa.Rd
usdm/man/usdm-package.Rd
usdm/man/plot.RasterVariogram.Rd
usdm/man/VIF-class.Rd
usdm/man/Variogram.Rd
usdm/man/speciesLISA-class.Rd