NEWS.md

In vcfppR: Rapid Manipulation of the Variant Call Format (VCF)

vcfppR 0.6.0

• upgrade vcfpp.h to v0.6.0
• new API vcfreader$setRegion
• new API vcfreader$getStatus

vcfppR 0.5.0

• upgrade vcfpp.h to v0.5.1
• add bcfreader$updateSamples() function
• vcfcomp: can take vcftable object as input
• vcfcomp: defaults changed setid=FALSE
• bug fix

vcfppR 0.4.6

• add vcfplot function
• fix bug in vcftable when FORMAT has unaligned list
• add vignette on vcfcomp

vcfppR 0.4.5

• add vcfcomp function
• fix memory leaks and pass ASAN check

vcfppR 0.4.0

• add setid option for vcftable
• patches for upcoming Rtools on windows

vcfppR 0.3.8

• fix issues on M1 Mac

vcfppR 0.3.7

• add vcfreader@rmFormatTag()
• add vcfreader@samples()
• vcftable supports vartype = 'sv'

vcfppR 0.3.6

• add vcfreader::line
• remove vcfreader::setVariant
• bug fix setFormatStr
• more units tests

vcfppR 0.3.5

• add vcfreader and vcfwriter

vcfppR 0.3.4

• support filters by variant ID

vcfppR 0.3.3

• use API of vcfpp.h v0.3.1
• set missing vaules in FORMAT to NA
• support filters by QUAL, FILTER and INFO

vcfppR 0.3.0

• First release using vcfpp.h v0.3.0
• add vcftable function
• add vcfsummary function
• add vcfpopgen function

vcfppR documentation built on Sept. 30, 2024, 1:06 a.m.