vhica: Vertical and Horizontal Inheritance Consistence Analysis

The "Vertical and Horizontal Inheritance Consistence Analysis" method is described in the following publication: "VHICA: a new method to discriminate between vertical and horizontal transposon transfer: application to the mariner family within Drosophila" by G. Wallau. et al. (2016) <DOI:10.1093/molbev/msv341>. The purpose of the method is to detect horizontal transfers of transposable elements, by contrasting the divergence of transposable element sequences with that of regular genes.

AuthorArnaud Le Rouzic
Date of publication2016-04-05 10:22:33
MaintainerArnaud Le Rouzic <lerouzic@egce.cnrs-gif.fr>
LicenseGPL-2
Version0.2.4

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Files

vhica
vhica/inst
vhica/inst/extdata
vhica/inst/extdata/mini-div.txt
vhica/inst/extdata/mini-cbias.txt
vhica/inst/extdata/phylo.nwk
vhica/inst/extdata/Genes
vhica/inst/extdata/Genes/Amd.fas
vhica/NAMESPACE
vhica/R
vhica/R/CUB.R vhica/R/read.vhica.R vhica/R/plot.vhica.R vhica/R/div.R vhica/R/image.vhica.R vhica/R/vhica-internal.R
vhica/MD5
vhica/DESCRIPTION
vhica/man
vhica/man/div.Rd vhica/man/plot.vhica.Rd vhica/man/vhica-package.Rd vhica/man/image.vhica.Rd vhica/man/read.vhica.Rd vhica/man/CUB.Rd

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