vhica: Vertical and Horizontal Inheritance Consistence Analysis

The "Vertical and Horizontal Inheritance Consistence Analysis" method is described in the following publication: "VHICA: a new method to discriminate between vertical and horizontal transposon transfer: application to the mariner family within Drosophila" by G. Wallau. et al. (2016) <DOI:10.1093/molbev/msv341>. The purpose of the method is to detect horizontal transfers of transposable elements, by contrasting the divergence of transposable element sequences with that of regular genes.

Install the latest version of this package by entering the following in R:
install.packages("vhica")
AuthorArnaud Le Rouzic
Date of publication2016-04-05 10:22:33
MaintainerArnaud Le Rouzic <lerouzic@egce.cnrs-gif.fr>
LicenseGPL-2
Version0.2.4

View on CRAN

Files

inst
inst/extdata
inst/extdata/mini-div.txt
inst/extdata/mini-cbias.txt
inst/extdata/phylo.nwk
inst/extdata/Genes
inst/extdata/Genes/Amd.fas
NAMESPACE
R
R/CUB.R R/read.vhica.R R/plot.vhica.R R/div.R R/image.vhica.R R/vhica-internal.R
MD5
DESCRIPTION
man
man/div.Rd man/plot.vhica.Rd man/vhica-package.Rd man/image.vhica.Rd man/read.vhica.Rd man/CUB.Rd

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