virtualspecies: Generation of Virtual Species Distributions

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Provides a framework for generating virtual species distributions, a procedure increasingly used in ecology to improve species distribution models. This package integrates the existing methodological approaches with the objective of generating virtual species distributions with increased ecological realism.

Author
Boris Leroy, Christine N. Meynard, Celine Bellard and Franck Courchamp
Date of publication
2015-05-15 21:51:44
Maintainer
Boris Leroy <leroy.boris@gmail.com>
License
GPL (>= 2.0)
Version
1.1
URLs

View on CRAN

Man pages

betaFun
Beta response function
convertToPA
Convert a virtual species distribution (or a suitability...
custnorm
Normal function defined by extremes
formatFunctions
Format and visualise functions used to generate virtual...
generateRandomSp
Generate a random virtual species distribution from...
generateSpFromFun
Generate a virtual species distributions with responses to...
generateSpFromPCA
Generate a virtual species distribution with a PCA of...
limitDistribution
Limit a virtual species distribution to a defined area
linearFun
Linear function
logisticFun
Logistic function
plotResponse
Visualise the response of the virtual species to...
quadraticFun
Quadratic function
removeCollinearity
Remove collinearity among variables of a a raster stack
sampleOccurrences
Sample occurrences in a virtual species distribution
synchroniseNA
Synchronise NA values among layers of a stack
virtualspecies-package
Generation of virtual species

Files in this package

virtualspecies
virtualspecies/inst
virtualspecies/inst/CITATION
virtualspecies/NAMESPACE
virtualspecies/R
virtualspecies/R/synchroniseNA.R
virtualspecies/R/virtualspecies-package.R
virtualspecies/R/removeCollinearity.R
virtualspecies/R/sp.env.functions.R
virtualspecies/R/genericfunctions.R
virtualspecies/R/limitDistribution.R
virtualspecies/R/sampleOccurrences.R
virtualspecies/R/generateSpFromPCA.R
virtualspecies/R/generateSpFromFun.R
virtualspecies/R/convertToPA.R
virtualspecies/R/formatFunctions.R
virtualspecies/R/thermalFunctionDraft.R
virtualspecies/R/generateRandomSp.R
virtualspecies/R/plotResponse.R
virtualspecies/README.md
virtualspecies/MD5
virtualspecies/DESCRIPTION
virtualspecies/man
virtualspecies/man/sampleOccurrences.Rd
virtualspecies/man/quadraticFun.Rd
virtualspecies/man/betaFun.Rd
virtualspecies/man/synchroniseNA.Rd
virtualspecies/man/plotResponse.Rd
virtualspecies/man/generateRandomSp.Rd
virtualspecies/man/logisticFun.Rd
virtualspecies/man/linearFun.Rd
virtualspecies/man/removeCollinearity.Rd
virtualspecies/man/formatFunctions.Rd
virtualspecies/man/convertToPA.Rd
virtualspecies/man/custnorm.Rd
virtualspecies/man/virtualspecies-package.Rd
virtualspecies/man/limitDistribution.Rd
virtualspecies/man/generateSpFromPCA.Rd
virtualspecies/man/generateSpFromFun.Rd