Man pages for visPedigree
Tidying, Analysis, and Fast Visualization of Animal and Plant Pedigrees
| apply_node_styles | Apply node styles (color, shape, highlighting) |
| as_tidyped | Restore the tidyped class to a manipulated pedigree |
| big_family_size_ped | A large pedigree with big family sizes |
| build_ped_meta | Build a unified metadata list for a tidyped object |
| compact_ped_for_matrix | Compact pedigree by merging full siblings for matrix... |
| compact_pedigree | Compact pedigree by merging full siblings |
| complex_ped | A complex pedigree |
| deep_ped | A deep pedigree |
| ensure_complete_tidyped | Internal helper to ensure ped is a complete tidyped object |
| ensure_tidyped | Internal helper to ensure ped is a tidyped object |
| expand_pedmat | Expand a Compact Pedigree Matrix to Full Dimensions |
| fade_cols | Fade colors by appending a reduced alpha value |
| finalize_graph | Finalize graph and reindex IDs |
| generate_graph_structure | Generate edges and virtual family nodes |
| get_highlight_ids | Styling and finalizing pedigree graph |
| half_founder_ped | A pedigree with half founders |
| has_candidates | Check whether a tidyped object contains candidate flags |
| has_inbreeding | Check whether a tidyped object contains inbreeding... |
| inbred_ped | A highly inbred pedigree |
| inbreed | Calculate inbreeding coefficients |
| inject_missing_parents | Inject missing parents for subsetted pedigrees |
| is_complete_pedigree | Check whether all referenced parents are present |
| is_tidyped | Test if an object is a tidyped |
| loop_ped | A pedigree with loops |
| new_tidyped | Internal constructor for tidyped class |
| ped2igraph | Convert pedigree to igraph structure |
| pedancestry | Calculate Ancestry Proportions |
| pedcontrib | Calculate Founder and Ancestor Contributions |
| pedecg | Calculate Equi-Generate Coefficient |
| pedfclass | Summarize Inbreeding Levels |
| pedgenint | Calculate Generation Intervals |
| pedhalflife | Calculate Information-Theoretic Diversity Half-Life |
| pediv | Calculate Genetic Diversity Indicators |
| pedmat | Genetic Relationship Matrices and Inbreeding Coefficients |
| pedmeta | Access pedigree metadata from a tidyped object |
| pedne | Calculate Effective Population Size |
| pedpartial | Calculate Partial Inbreeding |
| pedrel | Calculate Mean Relationship or Coancestry Within Groups |
| pedstats | Pedigree Statistics |
| pedsubpop | Pedigree Subpopulations |
| plot_ped_igraph | Render pedigree graph using Two-Pass strategy |
| plot.tidyped | Plot a tidy pedigree |
| prepare_initial_nodes | Prepare initial node table for igraph conversion |
| prepare_ped_graph | Internal layout engine for pedigree visualization |
| print.pedcontrib | Print Founder and Ancestor Contributions |
| print.pediv | Print Genetic Diversity Summary |
| print.pedstats | Print Pedigree Statistics |
| print.summary.tidyped | Print method for summary.tidyped |
| print.tidyped | Print method for tidyped pedigree |
| query_relationship | Query Relationship Coefficients from a Pedigree Matrix |
| repeloverlap | Repel overlapping nodes on the x-axis |
| require_complete_pedigree | Error on row-truncated pedigree subsets |
| simple_ped | A simple pedigree |
| small_ped | A small pedigree |
| splitped | Split Pedigree into Disconnected Groups |
| sub-.tidyped | Subset a tidyped object |
| summary_pedmat | Summary Statistics for Pedigree Matrices |
| summary.tidyped | Summary method for tidyped objects |
| tidyped | Tidy and prepare a pedigree |
| validate_tidyped | Internal validator for tidyped class |
| vismat | Visualize Relationship Matrices |
| visped | Visualize a tidy pedigree |
| vispstat | Visualize Pedigree Statistics (internal) |
