# vita: Variable Importance Testing Approaches

Implements the novel testing approach by Janitza et al.(2015) <http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4> for the permutation variable importance measure in a random forest and the PIMP-algorithm by Altmann et al.(2010) <doi:10.1093/bioinformatics/btq134>. Janitza et al.(2015) <http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4> do not use the "standard" permutation variable importance but the cross-validated permutation variable importance for the novel test approach. The cross-validated permutation variable importance is not based on the out-of-bag observations but uses a similar strategy which is inspired by the cross-validation procedure. The novel test approach can be applied for classification trees as well as for regression trees. However, the use of the novel testing approach has not been tested for regression trees so far, so this routine is meant for the expert user only and its current state is rather experimental.

- Author
- Ender Celik [aut, cre]
- Date of publication
- 2015-12-14 19:05:44
- Maintainer
- Ender Celik <celik.p.ender@gmail.com>
- License
- GPL (>= 2)
- Version
- 1.0.0

## Man pages

- compVarImp
- Compute permutation variable importance measure
- compVarImp
- Compute permutation variable importance measure
- CVPVI
- Cross-validated permutation variable importance measure
- CVPVI
- Cross-validated permutation variable importance measure
- NTA
- Novel testing approach
- PIMP
- PIMP-algorithm for the permutation variable importance...
- PIMP
- PIMP-algorithm for the permutation variable importance...
- PimpTest
- PIMP testing approach
- PimpTest
- PIMP testing approach
- summary.NTA
- Summarizing the results of novel testing approach
- summary.NTA
- Summarizing the results of novel testing approach
- summary.PimpTest
- Summarizing PIMP-algorithm outcomes
- summary.PimpTest
- Summarizing PIMP-algorithm outcomes
- VarImpCVl
- Fold-specific permutation variable importance measure
- VarImpCVl
- Fold-specific permutation variable importance measure
- vita-package
- Variable importance testing approaches (vita)
- vita-package
- Variable importance testing approaches (vita)

## Files in this package

vita |

vita/src |

vita/src/Rcpp_compVarImp.cpp |

vita/src/RcppExports.cpp |

vita/src/Rcpp_VarImpCVL.cpp |

vita/NAMESPACE |

vita/R |

vita/R/compVarImp.R |

vita/R/NTA.R |

vita/R/PIMP.R |

vita/R/summaryNTA.R |

vita/R/PimpTest.R |

vita/R/VarImpCVl.R |

vita/R/RcppExports.R |

vita/R/CVPVI.R |

vita/R/summaryPimpTest.R |

vita/MD5 |

vita/DESCRIPTION |

vita/man |

vita/man/VarImpCVl.Rd |

vita/man/PimpTest.Rd |

vita/man/summary.NTA.Rd |

vita/man/summary.PimpTest.Rd |

vita/man/compVarImp.Rd |

vita/man/NTA.Rd |

vita/man/PIMP.Rd |

vita/man/CVPVI.Rd |

vita/man/vita-package.Rd |