Provides fitting routines for four versions of the Vitality family of mortality models.

Author | Gregor Passolt, James J. Anderson, Ting Li, David H. Salinger, David J. Sharrow |

Date of publication | 2016-03-19 09:35:55 |

Maintainer | David J. Sharrow <dsharrow@uw.edu> |

License | GPL (>= 2) |

Version | 1.2 |

**daphnia:** Sample Daphnia Data

**dataPrep:** Function for data preparation

**ft.4p:** Density function for 3-parameter (r, s, u)

**ft.6p:** Density function for 2-parameters (r, s)

**indexFinder:** Finds the first value of a vector that is less than a value.

**logLikelihood.4p:** Log likelihood of 2-process 4-parameter model

**logLikelihood.6p:** Log likelihood of 2-process 6-parameter vitality model

**logLikelihood.k:** Log likelihood of 3-parameter (r,s,k) model

**logLikelihood.ku:** Log likelihood of 4-parameter (r,s,k,u) model

**mu.vd1.4p:** Intrinsic mortality rate for the 2-process 4-parameter...

**mu.vd1.6p:** Intrinsic mortality rate for the 2-process 6-parameter...

**mu.vd2.4p:** Extrinsic mortality rate for the 2-process 4-parameter...

**mu.vd2.6p:** Extrinsic mortality rate for the 2-process 6-parameter...

**mu.vd3.6p:** Adult extrinsic mortality rate for the 2-process 6-parameter...

**mu.vd4.6p:** Childhood extrinsic mortality rate for the 2-process...

**mu.vd.4p:** Total mortality rate for the 2-process 4-parameter vitality...

**mu.vd.6p:** Total mortality rate for the 2-process 6-parameter vitality...

**plotting.4p:** Plotting function for 2-process 4-parameter vitality model

**plotting.6p:** Plotting function for 2-process 6-parameter vitality model

**plotting.k:** Plotting function for 3-parameter vitality model

**plotting.ku:** Plotting function for 4-parameter vitality model

**rainbow_trout_for_k:** Sample Rainbow Trout Data

**stdErr.4p:** Standard errors for 4-parameters: r, s, lambda, beta

**stdErr.6p:** Standard errors for 6-parameters: r, s, lambda, beta, gamma,...

**stdErr.k:** Standard errors for 3-parameters: r, s, k

**stdErr.ku:** Standard errors for 4-parameters: r, s, k, u

**SurvFn.4p:** The cumulative survival distribution function for 2-process...

**SurvFn.6p:** The cumulative survival distribution function for 2-process...

**SurvFn.ex.4p:** The extrinsic cumulative survival distribution function for...

**SurvFn.ex.6p:** The extrinsic cumulative survival distribution function for...

**SurvFn.h.4p:** Intrinsic cumulative survival distribution for 4 parameter...

**SurvFn.h.6p:** Intrinsic cumulative survival distribution for 6 parameter...

**SurvFn.in.4p:** The intrinsic cumulative survival distribution function for...

**SurvFn.in.6p:** The intrinsic cumulative survival distribution function for...

**SurvFn.k:** The cumulative survival distribution function for 3-parameter...

**SurvFn.ku:** The cumulative survival distribution function for 4-parameter...

**survProbInc.4p:** Incremental survival probability for 2-process 4-parameter...

**survProbInc.6p:** Incremental survival probability for 2-process 6-parameter...

**survProbInc.k:** Incremental survival probability for 3-parameter model

**survProbInc.ku:** Incremental survival probability for 4-parameter model

**swedish_females:** Swedish Female Mortality Data

**vft.4p:** Vectorized density function

**vft.6p:** Vectorized density function

**vitality:** Fitting routines for the Vitality family of mortality models.

**vitality.4p:** Fitting routine for the 2-process, 4-parameter vitality model...

**vitality.6p:** Fitting routine for the 2-process, 6-parameter vitality model...

**vitality.k:** Fitting routine for the 3-parameter vitality model.

**vitality.ku:** Fitting routine for the 4-parameter vitality model.

vitality

vitality/NAMESPACE

vitality/data

vitality/data/rainbow_trout_for_k.rda

vitality/data/swedish_females.rda

vitality/data/daphnia.rda

vitality/R

vitality/R/vitality.ku.R
vitality/R/vitality.6p.R
vitality/R/mortality_rate.R
vitality/R/vitality.k.R
vitality/R/data_documentation.R
vitality/R/vitality.4p.R
vitality/R/dataPrep.R
vitality/R/density.R
vitality/R/vitality.utils.R
vitality/R/package_documentation.R
vitality/MD5

vitality/DESCRIPTION

vitality/man

vitality/man/swedish_females.Rd
vitality/man/ft.6p.Rd
vitality/man/SurvFn.ku.Rd
vitality/man/mu.vd.4p.Rd
vitality/man/plotting.ku.Rd
vitality/man/vitality.6p.Rd
vitality/man/stdErr.4p.Rd
vitality/man/rainbow_trout_for_k.Rd
vitality/man/stdErr.6p.Rd
vitality/man/vft.4p.Rd
vitality/man/ft.4p.Rd
vitality/man/daphnia.Rd
vitality/man/mu.vd2.6p.Rd
vitality/man/vitality.k.Rd
vitality/man/SurvFn.in.4p.Rd
vitality/man/mu.vd1.6p.Rd
vitality/man/mu.vd.6p.Rd
vitality/man/SurvFn.ex.6p.Rd
vitality/man/SurvFn.k.Rd
vitality/man/plotting.6p.Rd
vitality/man/logLikelihood.ku.Rd
vitality/man/SurvFn.h.6p.Rd
vitality/man/logLikelihood.k.Rd
vitality/man/logLikelihood.4p.Rd
vitality/man/survProbInc.ku.Rd
vitality/man/survProbInc.4p.Rd
vitality/man/SurvFn.6p.Rd
vitality/man/mu.vd2.4p.Rd
vitality/man/vitality.4p.Rd
vitality/man/mu.vd1.4p.Rd
vitality/man/SurvFn.4p.Rd
vitality/man/plotting.4p.Rd
vitality/man/SurvFn.h.4p.Rd
vitality/man/mu.vd3.6p.Rd
vitality/man/SurvFn.in.6p.Rd
vitality/man/stdErr.ku.Rd
vitality/man/survProbInc.6p.Rd
vitality/man/vft.6p.Rd
vitality/man/plotting.k.Rd
vitality/man/vitality.Rd
vitality/man/vitality.ku.Rd
vitality/man/stdErr.k.Rd
vitality/man/indexFinder.Rd
vitality/man/logLikelihood.6p.Rd
vitality/man/SurvFn.ex.4p.Rd
vitality/man/dataPrep.Rd
vitality/man/mu.vd4.6p.Rd
vitality/man/survProbInc.k.Rd
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