vitality: Fitting Routines for the Vitality Family of Mortality Models

Provides fitting routines for four versions of the Vitality family of mortality models.

AuthorGregor Passolt, James J. Anderson, Ting Li, David H. Salinger, David J. Sharrow
Date of publication2016-03-19 09:35:55
MaintainerDavid J. Sharrow <dsharrow@uw.edu>
LicenseGPL (>= 2)
Version1.2

View on CRAN

Man pages

daphnia: Sample Daphnia Data

dataPrep: Function for data preparation

ft.4p: Density function for 3-parameter (r, s, u)

ft.6p: Density function for 2-parameters (r, s)

indexFinder: Finds the first value of a vector that is less than a value.

logLikelihood.4p: Log likelihood of 2-process 4-parameter model

logLikelihood.6p: Log likelihood of 2-process 6-parameter vitality model

logLikelihood.k: Log likelihood of 3-parameter (r,s,k) model

logLikelihood.ku: Log likelihood of 4-parameter (r,s,k,u) model

mu.vd1.4p: Intrinsic mortality rate for the 2-process 4-parameter...

mu.vd1.6p: Intrinsic mortality rate for the 2-process 6-parameter...

mu.vd2.4p: Extrinsic mortality rate for the 2-process 4-parameter...

mu.vd2.6p: Extrinsic mortality rate for the 2-process 6-parameter...

mu.vd3.6p: Adult extrinsic mortality rate for the 2-process 6-parameter...

mu.vd4.6p: Childhood extrinsic mortality rate for the 2-process...

mu.vd.4p: Total mortality rate for the 2-process 4-parameter vitality...

mu.vd.6p: Total mortality rate for the 2-process 6-parameter vitality...

plotting.4p: Plotting function for 2-process 4-parameter vitality model

plotting.6p: Plotting function for 2-process 6-parameter vitality model

plotting.k: Plotting function for 3-parameter vitality model

plotting.ku: Plotting function for 4-parameter vitality model

rainbow_trout_for_k: Sample Rainbow Trout Data

stdErr.4p: Standard errors for 4-parameters: r, s, lambda, beta

stdErr.6p: Standard errors for 6-parameters: r, s, lambda, beta, gamma,...

stdErr.k: Standard errors for 3-parameters: r, s, k

stdErr.ku: Standard errors for 4-parameters: r, s, k, u

SurvFn.4p: The cumulative survival distribution function for 2-process...

SurvFn.6p: The cumulative survival distribution function for 2-process...

SurvFn.ex.4p: The extrinsic cumulative survival distribution function for...

SurvFn.ex.6p: The extrinsic cumulative survival distribution function for...

SurvFn.h.4p: Intrinsic cumulative survival distribution for 4 parameter...

SurvFn.h.6p: Intrinsic cumulative survival distribution for 6 parameter...

SurvFn.in.4p: The intrinsic cumulative survival distribution function for...

SurvFn.in.6p: The intrinsic cumulative survival distribution function for...

SurvFn.k: The cumulative survival distribution function for 3-parameter...

SurvFn.ku: The cumulative survival distribution function for 4-parameter...

survProbInc.4p: Incremental survival probability for 2-process 4-parameter...

survProbInc.6p: Incremental survival probability for 2-process 6-parameter...

survProbInc.k: Incremental survival probability for 3-parameter model

survProbInc.ku: Incremental survival probability for 4-parameter model

swedish_females: Swedish Female Mortality Data

vft.4p: Vectorized density function

vft.6p: Vectorized density function

vitality: Fitting routines for the Vitality family of mortality models.

vitality.4p: Fitting routine for the 2-process, 4-parameter vitality model...

vitality.6p: Fitting routine for the 2-process, 6-parameter vitality model...

vitality.k: Fitting routine for the 3-parameter vitality model.

vitality.ku: Fitting routine for the 4-parameter vitality model.

Functions

daphnia Man page
dataPrep Man page
ft.4p Man page
ft.6p Man page
indexFinder Man page
logLikelihood.4p Man page
logLikelihood.6p Man page
logLikelihood.k Man page
logLikelihood.ku Man page
mu.vd1.4p Man page
mu.vd1.6p Man page
mu.vd2.4p Man page
mu.vd2.6p Man page
mu.vd3.6p Man page
mu.vd4.6p Man page
mu.vd.4p Man page
mu.vd.6p Man page
plotting.4p Man page
plotting.6p Man page
plotting.k Man page
plotting.ku Man page
rainbow_trout_for_k Man page
stdErr.4p Man page
stdErr.6p Man page
stdErr.k Man page
stdErr.ku Man page
SurvFn.4p Man page
SurvFn.6p Man page
SurvFn.ex.4p Man page
SurvFn.ex.6p Man page
SurvFn.h.4p Man page
SurvFn.h.6p Man page
SurvFn.in.4p Man page
SurvFn.in.6p Man page
SurvFn.k Man page
SurvFn.ku Man page
survProbInc.4p Man page
survProbInc.6p Man page
survProbInc.k Man page
survProbInc.ku Man page
swedish_females Man page
vft.4p Man page
vft.6p Man page
vitality Man page
vitality.4p Man page
vitality.6p Man page
vitality.k Man page
vitality.ku Man page
vitality-package Man page

Files

vitality
vitality/NAMESPACE
vitality/data
vitality/data/rainbow_trout_for_k.rda
vitality/data/swedish_females.rda
vitality/data/daphnia.rda
vitality/R
vitality/R/vitality.ku.R vitality/R/vitality.6p.R vitality/R/mortality_rate.R vitality/R/vitality.k.R vitality/R/data_documentation.R vitality/R/vitality.4p.R vitality/R/dataPrep.R vitality/R/density.R vitality/R/vitality.utils.R vitality/R/package_documentation.R
vitality/MD5
vitality/DESCRIPTION
vitality/man
vitality/man/swedish_females.Rd vitality/man/ft.6p.Rd vitality/man/SurvFn.ku.Rd vitality/man/mu.vd.4p.Rd vitality/man/plotting.ku.Rd vitality/man/vitality.6p.Rd vitality/man/stdErr.4p.Rd vitality/man/rainbow_trout_for_k.Rd vitality/man/stdErr.6p.Rd vitality/man/vft.4p.Rd vitality/man/ft.4p.Rd vitality/man/daphnia.Rd vitality/man/mu.vd2.6p.Rd vitality/man/vitality.k.Rd vitality/man/SurvFn.in.4p.Rd vitality/man/mu.vd1.6p.Rd vitality/man/mu.vd.6p.Rd vitality/man/SurvFn.ex.6p.Rd vitality/man/SurvFn.k.Rd vitality/man/plotting.6p.Rd vitality/man/logLikelihood.ku.Rd vitality/man/SurvFn.h.6p.Rd vitality/man/logLikelihood.k.Rd vitality/man/logLikelihood.4p.Rd vitality/man/survProbInc.ku.Rd vitality/man/survProbInc.4p.Rd vitality/man/SurvFn.6p.Rd vitality/man/mu.vd2.4p.Rd vitality/man/vitality.4p.Rd vitality/man/mu.vd1.4p.Rd vitality/man/SurvFn.4p.Rd vitality/man/plotting.4p.Rd vitality/man/SurvFn.h.4p.Rd vitality/man/mu.vd3.6p.Rd vitality/man/SurvFn.in.6p.Rd vitality/man/stdErr.ku.Rd vitality/man/survProbInc.6p.Rd vitality/man/vft.6p.Rd vitality/man/plotting.k.Rd vitality/man/vitality.Rd vitality/man/vitality.ku.Rd vitality/man/stdErr.k.Rd vitality/man/indexFinder.Rd vitality/man/logLikelihood.6p.Rd vitality/man/SurvFn.ex.4p.Rd vitality/man/dataPrep.Rd vitality/man/mu.vd4.6p.Rd vitality/man/survProbInc.k.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.