Man pages for volcano3D
3D Volcano Plots and Polar Plots for Three-Class Data
| add_animation | Add mode bar button to rotate the plot |
| boxplot_trio | Boxplot to compare groups |
| calc_pvals | Calculate one-way test and pairwise tests |
| calc_stats_2x3 | Calculate p-values for 2x3-way analysis |
| deseq_2x3 | 2 x 3 factor DESeq2 analysis |
| deseq_2x3_polar | Convert 2x3 design DESeq2 objects to a volcano3d object |
| deseq_polar | Convert DESeq2 objects to a volcano3d object |
| forest_plot | Forest plot individual gene from 2x3 factor analysis |
| grid-class | An S4 class to define the polar grid coordinates system. |
| polar_coords | Coordinates for Three Way Polar Plot |
| polar_coords_2x3 | Coordinates for three way polar plot from 2x3 factor analysis |
| polar_grid | Grid required for 3D volcano plot and 2D radial plots |
| radial_ggplot | 'Ggplot' for Three Way Polar Plot |
| radial_plotly | Three-way radial comparison Polar Plot (using plotly) |
| show_grid | Plots grid objects for inspection using plotly |
| significance_subset | Extract a subset population |
| syn_example_meta | PEAC synovial sample data |
| syn_example_rld | PEAC synovial gene expression data |
| volc3d-class | An S4 class to define the polar coordinates. |
| volcano3D | Three-Dimensional Volcano Plot |
| voom_polar | Convert RNA-Seq count data to a volcano3d object using 'limma... |
