| vroom_fwf | R Documentation |
Fixed-width files store tabular data with each field occupying a specific range of character positions in every line. Once the fields are identified, converting them to the appropriate R types works just like for delimited files. The unique challenge with fixed-width files is describing where each field begins and ends. vroom tries to ease this pain by offering a few different ways to specify the field structure:
fwf_empty() - Guesses based on the positions of empty columns. This is
the default. (Note that fwf_empty() returns 0-based positions, for
internal use.)
fwf_widths() - Supply the widths of the columns.
fwf_positions() - Supply paired vectors of start and end positions. These
are interpreted as 1-based positions, so are off-by-one compared to the
output of fwf_empty().
fwf_cols() - Supply named arguments of paired start and end positions or
column widths.
Note: fwf_empty() cannot work with a connection or with any of the input
types that involve a connection internally, which includes remote and
compressed files. The reason is that this would necessitate reading from the
connection twice. In these cases, you'll have to either provide the field
structure explicitly with another fwf_*() function or download (and
decompress, if relevant) the file first.
vroom_fwf(
file,
col_positions = fwf_empty(file, skip, n = guess_max),
col_types = NULL,
col_select = NULL,
id = NULL,
locale = default_locale(),
na = c("", "NA"),
comment = "",
skip_empty_rows = TRUE,
trim_ws = TRUE,
skip = 0,
n_max = Inf,
guess_max = 100,
altrep = TRUE,
num_threads = vroom_threads(),
progress = vroom_progress(),
show_col_types = NULL,
.name_repair = "unique"
)
fwf_empty(file, skip = 0, col_names = NULL, comment = "", n = 100L)
fwf_widths(widths, col_names = NULL)
fwf_positions(start, end = NULL, col_names = NULL)
fwf_cols(...)
file |
Either a path to a file, a connection, or literal data (either a
single string or a raw vector). Files ending in Literal data is most useful for examples and tests. To be recognised as
literal data, wrap the input with |
col_positions |
Column positions, as created by |
col_types |
One of If Column specifications created by Alternatively, you can use a compact string representation where each character represents one column:
By default, reading a file without a column specification will print a
message showing the guessed types. To suppress this message, set
|
col_select |
Columns to include in the results. You can use the same
mini-language as |
id |
Either a string or 'NULL'. If a string, the output will contain a column with that name with the filename(s) as the value, i.e. this column effectively tells you the source of each row. If 'NULL' (the default), no such column will be created. |
locale |
The locale controls defaults that vary from place to place.
The default locale is US-centric (like R), but you can use
|
na |
Character vector of strings to interpret as missing values. Set this
option to |
comment |
A string used to identify comments. Any line that starts
with the comment string at the beginning of the file (before any data
lines) will be ignored. Unlike |
skip_empty_rows |
Should blank rows be ignored altogether? i.e. If this
option is |
trim_ws |
Should leading and trailing whitespace (ASCII spaces and tabs) be trimmed from each field before parsing it? |
skip |
Number of lines to skip before reading data. If |
n_max |
Maximum number of lines to read. |
guess_max |
Maximum number of lines to use for guessing column types.
See |
altrep |
Control which column types use Altrep representations,
either a character vector of types, |
num_threads |
Number of threads to use when reading and materializing vectors. If your data contains newlines within fields the parser will automatically be forced to use a single thread only. |
progress |
Display a progress bar? By default it will only display
in an interactive session and not while executing in an RStudio notebook
chunk. The display of the progress bar can be disabled by setting the
environment variable |
show_col_types |
Control showing the column specifications. If |
.name_repair |
Handling of column names. The default behaviour is to
ensure column names are
This argument is passed on as |
col_names |
Either NULL, or a character vector column names. |
n |
Number of lines the tokenizer will read to determine file structure. By default it is set to 100. |
widths |
Width of each field. Use |
start, end |
Starting and ending (inclusive) positions of each field.
Positions are 1-based: the first character in a line is at position 1.
Use |
... |
Named or unnamed arguments, each addressing one column. Each input should be either a single integer (a column width) or a pair of integers (column start and end positions). All arguments must have the same shape, i.e. all widths or all positions. |
Here's a enhanced example using the contents of the file accessed via
vroom_example("fwf-sample.txt").
1 2 3 4 123456789012345678901234567890123456789012 [ name 20 ][state 10][ ssn 12 ] John Smith WA 418-Y11-4111 Mary Hartford CA 319-Z19-4341 Evan Nolan IL 219-532-c301
Here are some valid field specifications for the above (they aren't all equivalent! but they are all valid):
fwf_widths(c(20, 10, 12), c("name", "state", "ssn"))
fwf_positions(c(1, 30), c(20, 42), c("name", "ssn"))
fwf_cols(state = c(21, 30), last = c(6, 20), first = c(1, 4), ssn = c(31, 42))
fwf_cols(name = c(1, 20), ssn = c(30, 42))
fwf_cols(name = 20, state = 10, ssn = 12)
fwf_sample <- vroom_example("fwf-sample.txt")
writeLines(vroom_lines(fwf_sample))
# You can specify column positions in several ways:
# 1. Guess based on position of empty columns
vroom_fwf(fwf_sample, fwf_empty(fwf_sample, col_names = c("first", "last", "state", "ssn")))
# 2. A vector of field widths
vroom_fwf(fwf_sample, fwf_widths(c(20, 10, 12), c("name", "state", "ssn")))
# 3. Paired vectors of start and end positions
vroom_fwf(fwf_sample, fwf_positions(c(1, 30), c(20, 42), c("name", "ssn")))
# 4. Named arguments with start and end positions
vroom_fwf(fwf_sample, fwf_cols(name = c(1, 20), ssn = c(30, 42)))
# 5. Named arguments with column widths
vroom_fwf(fwf_sample, fwf_cols(name = 20, state = 10, ssn = 12))
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