GenomeScan_initialize: initialize

In wISAM: Weighted Inbred Strain Association Mapping

Description

Initialize a GenomeScan

Arguments

y	vector of length n - the phenotype of each of n genomes (individuals or strains)
X	matrix of dimension n-by-c - the covariate value of each individual for c covariates
G	a list where each element is of length n - the genotype of each individual at p loci
K	matrix of dimension n-by-n - the covariance of the phenotype
w	matrix of dimension n-by-n - the inverse variance of the phenotype

Value

an object of class GenomeScan

Examples

library(wISAM)

wgs <- GenomeScan$new(y = phenotype,
                      X = covariate_mat,
                      G = locus_list,
                      K = kinship_mat,
                      w = 1/se_mean_per_strain)

wISAM documentation built on May 2, 2019, 9:14 a.m.