extract_lm_cv: Run linear model with crossvalidation

In waterquality: Satellite Derived Water Quality Detection Algorithms

Run linear model with crossvalidation

Description

The function runs a linear model on a single water quality parameter and a water quality algorithm and conducts a k-folds cross validation, which returns a data frame containing the following: The r^2, p-value, slope, intercept of the global lm model & average r^2, average RMSE, average MAE from the crossvalidated model

Usage

extract_lm_cv(
  parameter,
  algorithm,
  df,
  train_method = "lm",
  control_method = "repeatedcv",
  folds = 3,
  nrepeats = 5
)

Arguments

parameter	water quality parameter
algorithm	water quality algorithm
df	data frame containing the values for parameter and algorithm arguments
train_method	A string specifying which classification or regression model to use (Default = "lm"). See ?caret::train for more details
control_method	A string specifying the resampling method (Default = "repeatedcv"). See ?caret::trainControl for more details
folds	the number of folds to be used in the cross validation model
nrepeats	the number of iterations to be used in the cross validation model

Value

A data frame of the model results

References

Johansen, Richard; et al. (2018). Evaluating the portability of satellite derived chlorophyll-a algorithms for temperate inland lakes using airborne hyperspectral imagery and dense surface observations. Harmful Algae. 76. 10.1016/j.hal.2018.05.001.

R Core Team (2018). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.

Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer, Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau, Andrew Ziem, Luca Scrucca, Yuan Tang, Can Candan and Tyler Hunt. (2018). caret: Classification and Regression Training. R package version 6.0-81. https://CRAN.R-project.org/package=caret

See Also

Other extract_lm: extract_lm_cv_all(), extract_lm_cv_multi(), extract_lm()

waterquality documentation built on Aug. 8, 2023, 1:07 a.m.