wconf-package: wconf: Weighted Confusion Matrix
In wconf: Weighted Confusion Matrix

wconf-package

R Documentation

wconf: Weighted Confusion Matrix

Description

Allows users to create weighted confusion matrices and accuracy metrics that help with the model selection process for classification problems, where distance from the correct category is important. The package includes several weighting schemes which can be parameterized, as well as custom configuration options. Furthermore, users can decide whether they wish to positively or negatively affect the accuracy score as a result of applying weights to the confusion matrix. Functions are included to calculate accuracy metrics for imbalanced data. Finally, 'wconf' integrates well with the 'caret' package, but it can also work standalone when provided data in matrix form. References: Kuhn, M. (2008) "Building Perspective Models in R Using the caret Package" \Sexpr[results=rd]{tools:::Rd_expr_doi("10.18637/jss.v028.i05")} Monahov, A. (2021) "Model Evaluation with Weighted Threshold Optimization (and the mewto R package)" \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2139/ssrn.3805911")} Monahov, A. (2024) "Improved Accuracy Metrics for Classification with Imbalanced Data and Where Distance from the Truth Matters, with the wconf R Package" \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2139/ssrn.4802336")} Starovoitov, V., Golub, Y. (2020). New Function for Estimating Imbalanced Data Classification Results. Pattern Recognition and Image Analysis, 295–302 Van de Velden, M., Iodice D'Enza, A., Markos, A., Cavicchia, C. (2023) "A general framework for implementing distances for categorical variables" \Sexpr[results=rd]{tools:::Rd_expr_doi("10.48550/arXiv.2301.02190")}.

Details

weightmatrix - configures and visualizes a weight matrix

wconfusionmatrix - calculates the weighted confusion matrix from a caret ConfusionMatrix object or a simple matrix, according to one of several weighting schemas and optionally prints the weighted accuracy score.

rconfusionmatrix - calculates the redistributed confusion matrix by reallocating observations classified in the vicinity of the true category to the confusion matrix diagonal, according to a user-specified weighting scheme which determines the proportion of observations to reassign.

balancedaccuracy - calculates classification accuracy scores for imbalanced data using sine-based formulas proposed by Starovoitov and Golub (2020).

Author(s)

Alexandru Monahov

Source

Copyright Alexandru Monahov, 2024. You may use, modify and redistribute this code, provided that you give credit to the author and make any derivative work available to the public for free.

References

Kuhn, M. (2008). Building Perspective Models in R Using the caret Package. Journal of Statistical Software, 28(5), 1-26.

Monahov, A. (2021). Model Evaluation with Weighted Threshold Optimization (and the "mewto" R package), Machine Learning eJournal, SSRN.

Monahov, A. (2024). Improved Accuracy Metrics for Classification with Imbalanced Data and Where Distance from the Truth Matters, with the Wconf R Package, Computing Methodology eJournal, SSRN.

Starovoitov, V., Golub, Y. (2020). New Function for Estimating Imbalanced Data Classification Results. Pattern Recognition and Image Analysis, 295–302.

Van de Velden, M. et al. (2023). A general framework for implementing distances for categorical variables. arXiv.

Examples

# Generate sample data
m = matrix(c(70,0,0,10,10,0,5,3,2), ncol = 3, nrow=3)
# Experiment with several weighting schemes to find optimal solution
weightmatrix(n=4, weight.type="arithmetic", plot.weights = TRUE)
weightmatrix(n=4, weight.type="geometric", geometric.multiplier = 0.6)
weightmatrix(n=4, weight.type="geometric", geometric.multiplier = 2)
# Compute the weighted confusion matrix
wconfusionmatrix(m, weight.type = "arithmetic", print.weighted.accuracy = TRUE)
# Compute the redistributed confusion matrix
rconfusionmatrix(m, custom.weights = c(0,0.5,0.1), print.weighted.accuracy = TRUE)
# Calculate accuracy metrics for imbalanced data
balancedaccuracy(m, print.scores = TRUE)

wconf documentation built on Sept. 11, 2024, 6:22 p.m.