plot.trophicSDMfit: Plots the regression coefficients of a fitted trophicSDM...

In webSDM: Including Known Interactions in Species Distribution Models

Plots the regression coefficients of a fitted trophicSDM model

Description

Plots the regression coefficients of a fitted trophicSDM model. A subset of species to be plotted can be specified in the parameterspecies.

Usage

## S3 method for class 'trophicSDMfit'
plot(x, species = NULL, ...)

Arguments

x	A trophicSDMfit object obtained with trophicSDM()
species	A vector of species names to be plot. If NULL (default), all species are plotted.
...	additional arguments

Value

A plot of the regression coefficients of the fitted tropic SDM

Author(s)

Giovanni Poggiato

Examples

data(Y, X, G)
# define abiotic part of the model
env.formula = "~ X_1 + X_2"
# Run the model with bottom-up control using stan_glm as fitting method and no penalisation
# (set iter = 1000 to obtain reliable results)
m = trophicSDM(Y, X, G, env.formula, iter = 50,
               family = binomial(link = "logit"), penal = NULL, 
               mode = "prey", method = "stan_glm")
# Plot just the first three species

plot(m, species = c("Y1","Y2","Y3"))

# If species = NULL (default), all species are plotted.

webSDM documentation built on June 24, 2024, 5:13 p.m.