Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
|Date of publication||2016-10-05 09:30:05|
|Maintainer||Mike Meredith <firstname.lastname@example.org>|
AICc: Akaike's Information Criterion with small-sample correction -...
AICtable: Make a table for AIC or other criterion
allCombinations: Create formulae for all combinations of covariates
as_Bwiqid: Conversion to class Bwiqid
Bbinomial: Bayesian analysis of binomial data
biodIndices: Biodiversity indices
Bnormal: Bayesian modelling of a normal (Gaussian) distribution
BoccSS: Bayesian single-season occupancy modelling
Bsecr: Spatially explicit capture-recapture (secr) density...
closedCaptures: Analysis of mark-recapture data for closed populations
dippers: Capture-recapture data for European dippers
distance_measures: Plug-in distance-measure functions for 'distShell'.
distShell: Distance Matrix Computation
distTestData: An artificial data set to test distance/dissimilarity...
GrandSkinks: Multi-season detection data for grand skinks
KanhaTigers: Capture history matrix for camera-trapped tigers
KillarneyBirds: Abundance of woodland birds
linkFunctions: Logit and probit links for generalised linear modelling
MeadowVoles: Robust design mark-recapture data for meadow voles
occ2sps: Single-season two-species occupancy estimation
occMS: Multi-season occupancy estimation
occSS: Single-season occupancy estimation
occSSrn: Royle-Nichols model for single-season occupancy estimation
plot_Bwiqid: Plot method for objects of class 'Bwiqid'
plotComb: Display a posterior probability distribution from the comb...
plotDiagnostics: Diagnostic graphics for MCMC output
plotPost: Graphic display of a posterior probability distribution
postPriorOverlap: Overlap between posterior and prior probability...
print_Bwiqid: Print method for objects of class 'Bwiqid'
railSims: Simulated detection/non-detection data for two species of...
richCurve: Species richness estimates based on accumulation curves
richEstimators: Species richness estimators
richRarefy: Sample-based rarefaction curves
salamanders: Occupancy data for blue ridge salamanders
seedbank: Seed abundances in soil samples
showShinyApp: Display a 'shiny' application
stdPriors: Standardisation and priors
survivalCJS: Survival from recapture data with Cormack-Jolly-Seber (CJS)...
survivaRD: Survival from mark-recapture data with robust design
TDist: The Student t Distribution
Temburong: Tree species count data
WAIC: Extract the Watanabe-Akaike Information Criterion (WAIC)
weta: Detection data for weta in gorse bushes
window_Bwiqid: Time windows for 'Bwiqid' objects
wiqid-package: Fast, simple estimation functions for wildlife population...