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README.md
In wosr: Clients to the 'Web of Science' and 'InCites' APIs
wosr
R clients to the Web of Science and Incites APIs
Installation
You can get the stable version from CRAN:
install.packages("wosr")
Or the development version from GitHub:
if (!"devtools" %in% rownames(installed.packages()))
install.packages("devtools")
devtools::install_github("vt-arc/wosr")
Web of Science
library(wosr)
# Save your WoS API username and password in environment variables
Sys.setenv(WOS_USERNAME = "your_username", WOS_PASSWORD = "your_password")
# Get session ID
sid <- auth()
# Query WoS to see how many results match your query
query <- 'TS = ("animal welfare") AND PY = (2002-2003)'
query_wos(query, sid = sid)
#> Matching records: 548
# Download data
pull_wos(query, sid = sid)
#> List of 9
#> $ publication :'data.frame': 548 obs. of 7 variables:
#> ..$ ut : chr [1:548] "WOS:000186387100005" ...
#> ..$ title : chr [1:548] "Farm animal welfare: The interaction of et"..
#> ..$ journal : chr [1:548] "Animal Welfare" ...
#> ..$ date : Date[1:548], format: "2003-11-01" ...
#> ..$ doi : chr [1:548] NA ...
#> ..$ tot_cites: int [1:548] 37 15 ...
#> ..$ abstract : chr [1:548] "Farm animal welfare has now been studied, "..
#> $ author :'data.frame': 1438 obs. of 7 variables:
#> ..$ ut : chr [1:1438] "WOS:000186387100005" ...
#> ..$ author_no : int [1:1438] 1 2 ...
#> ..$ display_name: chr [1:1438] "Sandoe, P" ...
#> ..$ first_name : chr [1:1438] "P" ...
#> ..$ last_name : chr [1:1438] "Sandoe" ...
#> ..$ email : chr [1:1438] "pes@kvl.dk" ...
#> ..$ daisng_id : int [1:1438] 193024 3304655 ...
#> $ address :'data.frame': 838 obs. of 7 variables:
#> ..$ ut : chr [1:838] "WOS:000186387100005" ...
#> ..$ addr_no : int [1:838] 1 2 ...
#> ..$ org_pref: chr [1:838] "University of Copenhagen" ...
#> ..$ org : chr [1:838] "Royal Vet & Agr Univ" ...
#> ..$ city : chr [1:838] "Frederiksberg" ...
#> ..$ state : chr [1:838] NA ...
#> ..$ country : chr [1:838] "Denmark" ...
#> $ author_address:'data.frame': 18 obs. of 3 variables:
#> ..$ ut : chr [1:18] "WOS:000208276800197" ...
#> ..$ author_no: int [1:18] 1 2 ...
#> ..$ addr_no : int [1:18] 1 1 ...
#> $ jsc :'data.frame': 901 obs. of 2 variables:
#> ..$ ut : chr [1:901] "WOS:000186387100005" ...
#> ..$ jsc: chr [1:901] "Veterinary Sciences" ...
#> $ keyword :'data.frame': 2096 obs. of 2 variables:
#> ..$ ut : chr [1:2096] "WOS:000186387100005" ...
#> ..$ keyword: chr [1:2096] "animal welfare" ...
#> $ keywords_plus :'data.frame': 2020 obs. of 2 variables:
#> ..$ ut : chr [1:2020] "WOS:000179260700001" ...
#> ..$ keywords_plus: chr [1:2020] "system" ...
#> $ grant :'data.frame': 1 obs. of 3 variables:
#> ..$ ut : chr "WOS:000208574800048"
#> ..$ grant_agency: chr "Selcuk University Research Foundation"
#> ..$ grant_id : chr "2000/062"
#> $ doc_type :'data.frame': 642 obs. of 2 variables:
#> ..$ ut : chr [1:642] "WOS:000186387100005" ...
#> ..$ doc_type: chr [1:642] "Article" ...
InCites
# Save your InCites developer key in an environment variable
Sys.setenv(INCITES_KEY = "your_key")
# Vector of UTs (publication identifiers) to get InCites data for
uts <- c("000272272000015", "000272366800025", "000272877700013")
# Download InCites data for those UTs
pull_incites(uts)
#> ut article_type tot_cites journal_expected_citations
#> 1.1 WOS:000272877700013 AA 1 3.4
#> 1.2 WOS:000272366800025 AA 4 4.3
#> 1.3 WOS:000272272000015 AA 3 9.1
#> journal_act_exp_citations impact_factor avg_expected_rate percentile
#> 1.1 0.29 0.49 20 87
#> 1.2 0.93 0.85 20 63
#> 1.3 0.33 1.90 20 69
#> nci esi_most_cited_article hot_paper is_international_collab
#> 1.1 0.05 FALSE FALSE FALSE
#> 1.2 0.20 FALSE FALSE FALSE
#> 1.3 0.15 FALSE FALSE FALSE
#> is_institution_collab is_industry_collab oa_flag
#> 1.1 FALSE FALSE FALSE
#> 1.2 FALSE FALSE FALSE
#> 1.3 FALSE FALSE FALSE
Web of Science and InCites
# Download WoS data
wos <- pull_wos('TS = ("dog welfare")', sid = sid)
# Download InCites data
head(pull_incites(wos$publication$ut))
#> ut article_type tot_cites journal_expected_citations
#> 1.1 WOS:A1996VH04300002 AA 19 30.308
#> 1.2 WOS:000439855300030 L 0 0.068
#> 1.3 WOS:000438259600009 AA 1 1.186
#> 1.4 WOS:000438259600004 AA 1 1.186
#> 1.5 WOS:000436270600004 AA 1 0.321
#> 1.6 WOS:000435128900013 R 3 2.000
#> journal_act_exp_citations impact_factor avg_expected_rate percentile
#> 1.1 0.63 1.5 19.20 22.8
#> 1.2 0.00 2.0 0.11 100.0
#> 1.3 0.84 1.6 0.21 12.5
#> 1.4 0.84 1.6 0.21 12.5
#> 1.5 3.12 1.7 0.15 11.5
#> 1.6 1.50 1.6 0.40 1.5
#> nci esi_most_cited_article hot_paper is_international_collab
#> 1.1 0.99 FALSE FALSE FALSE
#> 1.2 0.00 FALSE FALSE FALSE
#> 1.3 4.74 FALSE FALSE FALSE
#> 1.4 4.74 FALSE FALSE FALSE
#> 1.5 6.46 FALSE FALSE FALSE
#> 1.6 7.46 FALSE FALSE TRUE
#> is_institution_collab is_industry_collab oa_flag
#> 1.1 FALSE FALSE FALSE
#> 1.2 FALSE FALSE FALSE
#> 1.3 FALSE FALSE FALSE
#> 1.4 FALSE FALSE FALSE
#> 1.5 FALSE FALSE TRUE
#> 1.6 TRUE FALSE FALSE
Learning more
- To learn more, head over to
wosr's webpage.
Try the wosr package in your browser
Any scripts or data that you put into this service are public.
wosr documentation built on May 1, 2019, 10:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
wosr
R clients to the Web of Science and Incites APIs
Installation
You can get the stable version from CRAN:
install.packages("wosr")
Or the development version from GitHub:
if (!"devtools" %in% rownames(installed.packages()))
install.packages("devtools")
devtools::install_github("vt-arc/wosr")
Web of Science
library(wosr)
# Save your WoS API username and password in environment variables
Sys.setenv(WOS_USERNAME = "your_username", WOS_PASSWORD = "your_password")
# Get session ID
sid <- auth()
# Query WoS to see how many results match your query
query <- 'TS = ("animal welfare") AND PY = (2002-2003)'
query_wos(query, sid = sid)
#> Matching records: 548
# Download data
pull_wos(query, sid = sid)
#> List of 9
#> $ publication :'data.frame': 548 obs. of 7 variables:
#> ..$ ut : chr [1:548] "WOS:000186387100005" ...
#> ..$ title : chr [1:548] "Farm animal welfare: The interaction of et"..
#> ..$ journal : chr [1:548] "Animal Welfare" ...
#> ..$ date : Date[1:548], format: "2003-11-01" ...
#> ..$ doi : chr [1:548] NA ...
#> ..$ tot_cites: int [1:548] 37 15 ...
#> ..$ abstract : chr [1:548] "Farm animal welfare has now been studied, "..
#> $ author :'data.frame': 1438 obs. of 7 variables:
#> ..$ ut : chr [1:1438] "WOS:000186387100005" ...
#> ..$ author_no : int [1:1438] 1 2 ...
#> ..$ display_name: chr [1:1438] "Sandoe, P" ...
#> ..$ first_name : chr [1:1438] "P" ...
#> ..$ last_name : chr [1:1438] "Sandoe" ...
#> ..$ email : chr [1:1438] "pes@kvl.dk" ...
#> ..$ daisng_id : int [1:1438] 193024 3304655 ...
#> $ address :'data.frame': 838 obs. of 7 variables:
#> ..$ ut : chr [1:838] "WOS:000186387100005" ...
#> ..$ addr_no : int [1:838] 1 2 ...
#> ..$ org_pref: chr [1:838] "University of Copenhagen" ...
#> ..$ org : chr [1:838] "Royal Vet & Agr Univ" ...
#> ..$ city : chr [1:838] "Frederiksberg" ...
#> ..$ state : chr [1:838] NA ...
#> ..$ country : chr [1:838] "Denmark" ...
#> $ author_address:'data.frame': 18 obs. of 3 variables:
#> ..$ ut : chr [1:18] "WOS:000208276800197" ...
#> ..$ author_no: int [1:18] 1 2 ...
#> ..$ addr_no : int [1:18] 1 1 ...
#> $ jsc :'data.frame': 901 obs. of 2 variables:
#> ..$ ut : chr [1:901] "WOS:000186387100005" ...
#> ..$ jsc: chr [1:901] "Veterinary Sciences" ...
#> $ keyword :'data.frame': 2096 obs. of 2 variables:
#> ..$ ut : chr [1:2096] "WOS:000186387100005" ...
#> ..$ keyword: chr [1:2096] "animal welfare" ...
#> $ keywords_plus :'data.frame': 2020 obs. of 2 variables:
#> ..$ ut : chr [1:2020] "WOS:000179260700001" ...
#> ..$ keywords_plus: chr [1:2020] "system" ...
#> $ grant :'data.frame': 1 obs. of 3 variables:
#> ..$ ut : chr "WOS:000208574800048"
#> ..$ grant_agency: chr "Selcuk University Research Foundation"
#> ..$ grant_id : chr "2000/062"
#> $ doc_type :'data.frame': 642 obs. of 2 variables:
#> ..$ ut : chr [1:642] "WOS:000186387100005" ...
#> ..$ doc_type: chr [1:642] "Article" ...
InCites
# Save your InCites developer key in an environment variable
Sys.setenv(INCITES_KEY = "your_key")
# Vector of UTs (publication identifiers) to get InCites data for
uts <- c("000272272000015", "000272366800025", "000272877700013")
# Download InCites data for those UTs
pull_incites(uts)
#> ut article_type tot_cites journal_expected_citations
#> 1.1 WOS:000272877700013 AA 1 3.4
#> 1.2 WOS:000272366800025 AA 4 4.3
#> 1.3 WOS:000272272000015 AA 3 9.1
#> journal_act_exp_citations impact_factor avg_expected_rate percentile
#> 1.1 0.29 0.49 20 87
#> 1.2 0.93 0.85 20 63
#> 1.3 0.33 1.90 20 69
#> nci esi_most_cited_article hot_paper is_international_collab
#> 1.1 0.05 FALSE FALSE FALSE
#> 1.2 0.20 FALSE FALSE FALSE
#> 1.3 0.15 FALSE FALSE FALSE
#> is_institution_collab is_industry_collab oa_flag
#> 1.1 FALSE FALSE FALSE
#> 1.2 FALSE FALSE FALSE
#> 1.3 FALSE FALSE FALSE
Web of Science and InCites
# Download WoS data
wos <- pull_wos('TS = ("dog welfare")', sid = sid)
# Download InCites data
head(pull_incites(wos$publication$ut))
#> ut article_type tot_cites journal_expected_citations
#> 1.1 WOS:A1996VH04300002 AA 19 30.308
#> 1.2 WOS:000439855300030 L 0 0.068
#> 1.3 WOS:000438259600009 AA 1 1.186
#> 1.4 WOS:000438259600004 AA 1 1.186
#> 1.5 WOS:000436270600004 AA 1 0.321
#> 1.6 WOS:000435128900013 R 3 2.000
#> journal_act_exp_citations impact_factor avg_expected_rate percentile
#> 1.1 0.63 1.5 19.20 22.8
#> 1.2 0.00 2.0 0.11 100.0
#> 1.3 0.84 1.6 0.21 12.5
#> 1.4 0.84 1.6 0.21 12.5
#> 1.5 3.12 1.7 0.15 11.5
#> 1.6 1.50 1.6 0.40 1.5
#> nci esi_most_cited_article hot_paper is_international_collab
#> 1.1 0.99 FALSE FALSE FALSE
#> 1.2 0.00 FALSE FALSE FALSE
#> 1.3 4.74 FALSE FALSE FALSE
#> 1.4 4.74 FALSE FALSE FALSE
#> 1.5 6.46 FALSE FALSE FALSE
#> 1.6 7.46 FALSE FALSE TRUE
#> is_institution_collab is_industry_collab oa_flag
#> 1.1 FALSE FALSE FALSE
#> 1.2 FALSE FALSE FALSE
#> 1.3 FALSE FALSE FALSE
#> 1.4 FALSE FALSE FALSE
#> 1.5 FALSE FALSE TRUE
#> 1.6 TRUE FALSE FALSE
Learning more
- To learn more, head over to
wosr's webpage.
Try the wosr package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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Add the following code to your website.
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