getUPS1acc: Accession-Numbers And Names Of UPS1 Proteins

In wrProteo: Proteomics Data Analysis Functions

Accession-Numbers And Names Of UPS1 Proteins

Description

UPS1 (see https://www.sigmaaldrich.com/FR/en/product/sigma/ups1) and UPS2 are commerical products consisting of a mix of 48 human (purified) proteins. They are frequently used as standard in spike-in experiments, available from Sigma-Aldrich. This function allows accessing their protein accession numbers and associated names on UniProt

Usage

getUPS1acc(updated = TRUE)

Arguments

updated

(logical) return updated accession number (of UBB)

Details

Please note that the UniProt accession 'P62988' for 'UBIQ_HUMAN' (as originally cited by Sigma-Aldrich) has been withdrawn and replaced in 2010 by UniProt by the accessions 'P0CG47', 'P0CG48', 'P62979', and 'P62987'. This initial accession is available via getUPS1acc()$acOld, now getUPS1acc()$ac contains 'P0CG47'.

Value

This function returns data.frame with accession-numbers as stated by the supplier ($acFull), trimmed accession-numbers, ie without version numbers ($ac), and associated (UniProt) entry-names ($EntryName) from UniProt as well as the species designation for the collection of 48 human UPS1 or UPS2 proteins.

Examples

head(getUPS1acc())

wrProteo documentation built on April 12, 2025, 1:16 a.m.