knitr::opts_chunk$set( comment = '' )
The {xdvir} package provides functions for rendering LaTeX fragments in R plots.
library(xdvir)
## Math typesetting by LuaTeX can fall back into mode=base ## (which we can't currently handle) ## so use XeTeX engine for this vignette options("xdvir.engine"="xetex")
The plot below, produced with R, features a LaTeX-quality mathematical equation in the top-left corner. Producing an equation like this requires three things:
A markup language that allows us to describe the equation.
A typesetter that can select fonts and individual glyphs from within those fonts and determine the exact placement of each individual glyph.
A renderer that can draw the glyphs from the fonts that the typesetter has selected in the locations that the typesetter has determined.
tex <- r"(\huge $\Phi(z) = \frac{1}{\sqrt{2\pi}} \cdot e^{-\frac{z^2}{2}}$)"
library(gggrid)
x <- seq(-4, 4, length.out=100) df <- data.frame(x=x, y=dnorm(x))
gg <- ggplot(df) + geom_line(aes(x, y))
gg + grid_panel(latexGrob(tex, x=0, y=1, hjust="left", vjust="top")) + xlim(-4, 4) + geom_area(aes(x, y), colour=NA, fill="grey90") + geom_line(aes(x, y)) + scale_x_continuous(expand=expansion(0)) + scale_y_continuous(expand=expansion(c(0))) + coord_cartesian(clip="off") + theme_minimal() + theme(panel.grid=element_blank(), axis.title=element_blank(), axis.text.y=element_blank(), plot.margin=unit(rep(4, 4), "mm"))
The {xdvir} package allows us to use LaTeX as the markup language, a TeX engine as the typesetter, and R as the renderer. This allows us to produce high-quality LaTeX typesetting within R plots, as in the image above.
The main function in {xdvir} is grid.latex()
,
which takes a LaTeX snippet and draws it on the
current R graphics device.
For example, the following code
describes the mathematical equation, using LaTeX code, as a character value,
then draws it by calling grid.latex()
with the character value
as the first argument.
Because LaTeX code tends to contain
a large number of backslashes, the code below uses the r"(...)"
syntax for raw character constants, so that we do not have to
escape each backslash with a double backslash.
<<tex>>
grid.latex(tex)
The function grid.latex()
only provides a low-level
interface for drawing LaTeX snippets as part of {grid} output.
However, there are ways to combine {grid} output with higher-level
plotting packages.
For example, we can use {grid} within panel functions in the
{lattice} package [@pkg-lattice]. The following code draws a {lattice} plot
and adds the mathematical equation in the top-left corner.
This demonstrates that the grid.latex()
function has
arguments x
, y
, hjust
, and vjust
for positioning the
LaTeX output.
library(lattice)
<<gaussian>>
oopt <- lattice.options(layout.widths=list(left.padding=list(x=0), right.padding=list(x=0)), layout.heights=list(bottom.padding=list(x=0), top.padding=list(x=0)))
xyplot(y ~ x, df, type="l", panel=function(...) { panel.xyplot(...) grid.latex(tex, x=unit(2, "mm"), y=unit(1, "npc") - unit(2, "mm"), hjust="left", vjust="top") })
lattice.options(oopt)
<<lattice-init>> <<lattice-plot>> <<lattice-final>>
If we want to add {grid} output to a {graphics} plot, we can use the
{gridGraphics} package [@RJ-2015-012; @pkg-gridGraphics].
For example,
the following code draws a {graphics} plot, uses gridGraphics::grid.echo()
to
convert it to {grid}, navigates to the {grid} viewport that
represents the main plot region, and draws the mathematical equation
in the top-left corner.
library(gridGraphics)
opar <- par(mar=c(4, 4, 1, 1))
plot(y ~ x, df, type="l") grid.echo() downViewport("graphics-plot-1") grid.latex(tex, x=unit(2, "mm"), y=unit(1, "npc") - unit(2, "mm"), hjust="left", vjust="top")
par(opar)
<<graphics-init>> <<graphics-plot>> <<graphics-final>>
We can add {grid} output to {ggplot2} plots [@pkg-ggplot2]
with the {gggrid}
package [@murrell-gggrid-2021; @pkg-gggrid].
The following
code uses the latexGrob()
function to generate a "graphical object"
for {ggplot2} to draw, rather than drawing the output immediately as
grid.latex()
does, and passes that to gggrid::grid_panel()
so that the mathematical equation is added in the top-left corner
of the plot.
library(gggrid)
<<ggbase>>
gg + grid_panel(latexGrob(tex, x=unit(2, "mm"), y=unit(1, "npc") - unit(2, "mm"), hjust="left", vjust="top"))
Another way to do this in {ggplot2} is with
ggplot2::annotation_custom()
, though precisely positioning the annotation
may be less convenient.
The {xdvir} package also provides integration with labels in {ggplot2}
plots. This allows, for example, the title of a plot to contain
LaTeX code, as shown in the image below. For this to work, the relevant theme
element must be set using element_latex()
, as shown in the code below.
gg + labs(title=paste("The Normal Distribution:", tex)) + theme(plot.title=element_latex())
Although the need is probably less, for completeness, there is also
a geom_latex()
for adding LaTeX-styled data symbols.
For example, the following code adds LaTeX text labels to a
dot plot.
samples <- data.frame(x=rnorm(50), sample=rep(1:5, each=10)) means <- aggregate(samples$x, list(sample=samples$sample), mean) means$label <- paste0("$\\bar x_", means$sample, "$")
ggplot(samples) + geom_vline(xintercept=0, linetype="solid", colour=1, linewidth=.5) + geom_point(aes(x, sample), size=4, alpha=.5) + geom_point(aes(x, sample), data=means, colour=2, size=4) + geom_latex(aes(x, sample, label=label), data=means, size=6, vjust=-.4, colour=2) + scale_y_continuous(expand=expansion(.25))
The {xdvir} package provides similar functionality to the {gridtext} and {ggtext} packages [@pkg-gridtext; @pkg-ggtext] and the {marquee} package [@pkg-marquee]. The main difference is the markup language that is supported. Where those packages are built on markdown, {xdvir} is built on LaTeX, with all of the joy and pain that that brings.
The {xdvir} package relies on the glyph rendering support that was
added to the R graphics engine in R version 4.3.0
[@murrell-pedersen-urbanek-glyphs-2023].
Furthermore, this support is only available on specific graphics devices:
the core pdf()
, Cairo-based devices, and quartz()
devices, plus
the devices provided by the {ragg} package [@pkg-ragg].
R Studio users should set the graphics backend to
"AGG" or "cairo" (if either of those is not the default).
The {xdvir} package also relies on there being a TeX installation.
When the package is attached, it reports on the TeX features that
it can find (see the top of this document for an example).
If TeX is not found, the simplest solution is to use
tinytex::install_tinytex()
.
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