anova.mexhazLT: anova.mexhazLT function used for likelihood-ratio Test of two...

In xhaz: Excess Hazard Modelling Considering Inappropriate Mortality Rates

anova.mexhazLT function used for likelihood-ratio Test of two models from mexhaz function

Description

This function compute an analysis of deviance table for two excess hazard models fitted using xhaz R package.

Usage

## S3 method for class 'mexhazLT'
anova(object, ..., test = "LRT")

Arguments

object	an object of class mexhazLT
...	an object of class mexhazLT
test	a character string. The appropriate test is a likelihood-ratio test, all other choices result in Not yet implemented test.

Value

An object of class anova inheriting from class matrix. The different columns contain respectively the degrees of freedom and the log-likelihood values of the two nested models, the degree of freedom of the chi-square statistic, the chi-square statistic and the p-value of the likelihood ratio test.

Note

As expected, the comparison between two or more models by anova or more excess hazard models will only be valid if they are fitted to the same dataset, and if the compared models are nested. This may be a problem if there are missing values.

Author(s)

Juste Goungounga, Hadrien Charvat, Robert Darlin Mba, Nathalie Graff\'eo and Roch Giorgi

References

Goungounga JA, Touraine C, Graff\'eo N, Giorgi R; CENSUR working survival group. Correcting for misclassification and selection effects in estimating net survival in clinical trials. BMC Med Res Methodol. 2019 May 16;19(1):104. doi: 10.1186/s12874-019-0747-3. PMID: 31096911; PMCID: PMC6524224. (PubMed)

Goungounga, JA, Graff\'eo N, Charvat H, Giorgi R. “Correcting for heterogeneity and non-comparability bias in multicenter clinical trials with a rescaled random-effect excess hazard model.” Biometrical journal. Biometrische Zeitschrift vol. 65,4 (2023): e2100210. doi:10.1002/bimj.202100210.PMID: 36890623; (PubMed)

See Also

xhaz, mexhazLT, AIC.mexhazLT

Examples

# load the data set in the package
library("survival")
library("numDeriv")
library("survexp.fr")


breast$sexe <- "female"

fit.haz <- exphaz(
                  formula = Surv(temps, statut) ~ 1,
                  data = breast, ratetable = survexp.us,
                  only_ehazard = FALSE,
                  rmap = list(age = 'age', sex = 'sexe', year = 'date'))

breast$expected <- fit.haz$ehazard
breast$expectedCum <- fit.haz$ehazardInt

mod.bs3 <- mexhazLT(formula = Surv(temps, statut) ~ agecr + armt,
                  data = breast,
                  ratetable = survexp.us, degree = 3,
                  knots=quantile(breast[breast$statut==1,]$temps, probs=c(1:2/3)),
                  expected = "expected",expectedCum = "expectedCum",
                  base = "exp.bs", pophaz = "classic", random ="hosp")

mod.bs3

mod.bs4 <- mexhazLT(formula = Surv(temps, statut) ~ agecr + armt,
                  data = breast,
                  ratetable = survexp.us, degree = 3,
                  knots=quantile(breast[breast$statut==1,]$temps, probs=c(1:2/3)),
                  expected = "expected",expectedCum = "expectedCum",
                  base = "exp.bs", pophaz = "rescaled", random = "hosp")

mod.bs4

  anova(mod.bs3, mod.bs4)

xhaz documentation built on June 30, 2024, 1:07 a.m.