Files in xnicher
Estimates Ecological Niche Models Using Ellipses
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/start_theta.R
R/example_occ_df.R
R/kde_gaussian.R
R/example_env_occ_2d.R
R/loglik_niche_math_ip_weighted.R
R/loglik_niche_math_ncst_r.R
R/loglik_niche_math_ip_weighted_integrated.R
R/example_mu_vec.R
R/ic.R
R/loglik_niche.R
R/xnicher-package.R
R/plot_helpers.R
R/example_env_m_3d.R
R/example_env_m_2d.R
R/cv.R
R/xnicher_class.R
R/habitat_suitability.R
R/rhipicephalus.R
R/optimize_niche_xptr.R
R/predict_xnicher.R
R/example_s_mat.R
R/example_env_occ_3d.R
R/get_range_df_niche.R
R/geom_xnicher.R
R/optimize_niche.R
R/loglik_niche_math_presence_only.R
R/niche_presence_only.R
R/loglik_niche_math_cpp.R
R/get_ellipsoid_pars.R
R/start_theta_multiple.R
R/example_vicugna.R
R/niche_ip_weighted.R
R/cvine_cholesky.R
src/Makevars.win
src/Makevars
src/cvine_cholesky.cpp
src/niche_obj.cpp
src/niche_suitability_cpp.cpp
src/loglik_niche_ip_weighted_cpp.cpp
src/RcppExports.cpp
src/mahalanobis.cpp
src/loglik_niche_chol_cpp.cpp
src/xnicher_types.h
src/loglik_niche_math_cpp.cpp
src/loglik_niche_presence_only.cpp
src/kde_2d.cpp
src/kde_eigen.cpp
src/kde_gaussian_2d_wrapper.cpp
src/kde_gaussian_eigen_wrapper.cpp
inst/CITATION
inst/WORDLIST
inst/extdata/Mshp_test.rds
inst/extdata/stack_1_12_crop.tif
inst/extdata/rhipicephalus_env.tif
build/partial.rdb
tests/testthat.R
tests/testthat/test-loglik_math_ncst_cpp_vs_r.R
tests/testthat/test-habitat_suitability.R
tests/testthat/test-validate-xptr-subsample.R
tests/testthat/test-cv-coverage.R
tests/testthat/test-ic.R
tests/testthat/test-kde_sampling_policy.R
tests/testthat/test-predict-coverage.R
tests/testthat/test-xnicher-class.R
tests/testthat/test-niche_suitability_cpp.R
tests/testthat/test-cran-readiness.R
tests/testthat/test-predict_xnicher.R
tests/testthat/test-niche-wrappers.R
tests/testthat/test-loglik_math_grad_parity.R
tests/testthat/test-loglik_math_cpp_parity.R
tests/testthat/test-optimize_niche_ncst.R
tests/testthat/test-cv.R
tests/testthat/test-plot_helpers.R
tests/testthat/test-po-anchored-penalty.R
data/rhipicephalus_occ.rda
data/example_s_mat.rda
data/example_occ_df.rda
data/example_env_occ_3d.rda
data/example_mu_vec.rda
data/example_env_m_3d.rda
data/example_env_occ_2d.rda
data/rhipicephalus.rda
data/example_vicugna.rda
data/example_env_m_2d.rda
man/geom_xnicher_occ.Rd
man/geom_xnicher_background.Rd
man/dot-validate_xptr_result.Rd
man/kde_gaussian.Rd
man/example_occ_df.Rd
man/example_vicugna.Rd
man/predict.xnicher.Rd
man/cvine_cholesky.Rd
man/loglik_niche_math_ip_weighted_integrated.Rd
man/get_ellipsoid_pars.Rd
man/example_env_m_2d.Rd
man/xnicher-package.Rd
man/assess.xnicher.Rd
man/compare_xnicher.Rd
man/print.xnicher.Rd
man/logLik.xnicher.Rd
man/optimize_niche_xptr.Rd
man/niche_presence_only.Rd
man/rhipicephalus.Rd
man/nobs.xnicher.Rd
man/example_s_mat.Rd
man/cv_xnicher.Rd
man/geom_xnicher_ellipse.Rd
man/example_mu_vec.Rd
man/loglik_niche_math_presence_only.Rd
man/loglik_niche.Rd
man/geom_xnicher_isosuitability.Rd
man/example_env_occ_3d.Rd
man/loglik_niche_math_ip_weighted.Rd
man/example_env_occ_2d.Rd
man/rhipicephalus_occ.Rd
man/example_env_m_3d.Rd
man/habitat_suitability.Rd
man/start_theta_multiple.Rd
man/niche_ip_weighted.Rd
man/niche_suitability_cpp.Rd
man/get_range_df_niche.Rd
man/BIC.xnicher.Rd
man/new_xnicher.Rd
man/start_theta.Rd
man/dot-resolve_weighted_inputs.Rd
man/optimize_niche.Rd
man/dot-optimize_niche_helper_cpp.Rd
man/assess.Rd
man/AIC.xnicher.Rd
man/loglik_niche_math_ncst_r.Rd
man/loglik_niche_math_cpp.Rd
man/figures/README-predict2vars-1.png
man/figures/README-example-1.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-2varsPars-1.png
man/figures/README-unnamed-chunk-2-2.png
man/figures/README-quick-start-isosuitability-1.png
man/figures/README-cars-1.png
man/figures/README-pressure-1.png
man/figures/README-3varsPars-1.png
man/figures/xnicher-logo.png
man/figures/README-quick-start-plot-1.png
man/figures/README-quick-start-raster-plot-1.png
man/figures/README-predict3vars-1.png
