xoi: Tools for Analyzing Crossover Interference

Analysis of crossover interference in experimental crosses, particularly regarding the gamma model.

Install the latest version of this package by entering the following in R:
install.packages("xoi")
AuthorKarl W Broman <kbroman@biostat.wisc.edu>, with contributions from Il-Youp Kwak
Date of publication2015-10-18 17:20:01
MaintainerKarl W Broman <kbroman@biostat.wisc.edu>
LicenseGPL-3
Version0.66-9
http://github.com/kbroman/xoi

View on CRAN

Functions

bssbsb Man page
chiasma Man page
coincidence Man page
convertxoloc Man page
countxo Man page
distance.given.two Man page
est.coi Man page
est.coi.um Man page
est.recrate Man page
find.breaks Man page
firstden Man page
first.given.two Man page
fitGamma Man page
fitStahl Man page
gammacoi Man page
intensity Man page
ioden Man page
joint.given.two Man page
kfunc Man page
location.given.one Man page
recrate2scanone Man page
simStahl Man page
stahlcoi Man page
stahlLoglik Man page
xoiversion Man page
xoprob Man page

Files

inst
inst/STATUS.txt
inst/LICENSE.txt
inst/README.md
inst/INSTALL_ME.txt
tests
tests/testthat.R
tests/testthat
tests/testthat/test-est_um.R tests/testthat/test-calc_Lstar.R
src
src/chiasma.c
src/chiasma.h
src/coi_um.c
src/GammaS.h
src/GammaUtil.c
src/coincidence.c
src/GammaDensities.c
src/kfunc.h
src/GammaS.c
src/fitStahl.c
src/recrate.c
src/coi_um.h
src/coincidence.h
src/kwak_coincidence.c
src/simStahl.c
src/kwak_intensity.c
src/GammaIntegral.c
src/stahl_util.c
src/kfunc.c
src/GammaLoglik.c
src/recrate.h
src/kwak.h
src/zeroin.c
src/stahl_util.h
src/zeroin.h
src/kwak_get_n_xo.c
src/simStahl.h
src/fitStahl.h
src/kwak_identify.c
NAMESPACE
data
data/bssbsb.RData
R
R/kwak_coincidence.R R/fitStahl.R R/kwak_identify_xo.R R/gammaDensities.R R/xoiversion.R R/kwak_intensity.R R/fitGamma.R R/simStahl.R R/coi_um.R R/coincidence.R R/kfunc.R R/util.R R/recrate.R R/bssbsb-data.R R/kwak_get_n_xo.R R/chiasma.R
MD5
DESCRIPTION
man
man/stahlLoglik.Rd man/fitGamma.Rd man/joint.given.two.Rd man/stahlcoi.Rd man/chiasma.Rd man/countxo.Rd man/est.recrate.Rd man/xoprob.Rd man/distance.given.two.Rd man/est.coi.um.Rd man/simStahl.Rd man/location.given.one.Rd man/fitStahl.Rd man/find.breaks.Rd man/ioden.Rd man/est.coi.Rd man/recrate2scanone.Rd man/kfunc.Rd man/coincidence.Rd man/convertxoloc.Rd man/first.given.two.Rd man/bssbsb.Rd man/firstden.Rd man/gammacoi.Rd man/intensity.Rd man/xoiversion.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.